lmdme 1.6.0
Cristobal Fresno
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/lmdme | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | [ OK ] | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch lmdme_1.6.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-2.14-bioc/meat/lmdme.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘lmdme/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘lmdme’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lmdme’ can be installed ... [5s/6s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
permutation,formula-data.frame-data.frame: no visible binding for
global variable ‘mclapply’
permutation,formula-data.frame-data.frame: no visible global function
definition for ‘detectCores’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [92s/80s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
lmdme-permutation 7.960 1.453 10.421
lmdme-biplot 8.261 0.522 8.815
lmdme-leverage 7.298 0.546 7.884
lmdme-padjust 6.948 0.581 7.542
lmdme-getters 6.912 0.569 7.583
lmdme-decomposition 6.607 0.559 7.186
lmdme-loadingplot 6.468 0.562 7.104
lmdme-screeplot 6.451 0.577 7.064
lmdme-printshow 6.204 0.660 6.976
lmdme-lmdme 6.314 0.507 6.859
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/Users/biocbuild/bbs-2.14-bioc/meat/lmdme.Rcheck/00check.log’
for details.
* installing *source* package ‘lmdme’ ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘fitted.values’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘fitted’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘coef’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘coefficients’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘resid’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘residuals’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘print’ from package ‘base’ in package ‘lmdme’
Creating a generic function for ‘summary’ from package ‘base’ in package ‘lmdme’
Creating a new generic function for ‘p.adjust’ in package ‘lmdme’
Creating a generic function for ‘biplot’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘screeplot’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘loadingplot’ from package ‘pls’ in package ‘lmdme’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lmdme)