BioC 2.14: CHECK report for ibh on moscato2

Package: ibh

Version: 1.12.0

Command: rm -rf ibh.buildbin-libdir && mkdir ibh.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ibh.buildbin-libdir ibh_1.12.0.tar.gz >ibh-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=ibh.buildbin-libdir --install="check:ibh-install.out" --force-multiarch --no-vignettes --timings ibh_1.12.0.tar.gz

StartedAt: 2014-10-08 02:11:29 -0700 (Wed, 08 Oct 2014)

EndedAt: 2014-10-08 02:11:57 -0700 (Wed, 08 Oct 2014)

EllapsedTime: 28.0 seconds

RetCode: 0

Status:  OK

CheckDir: ibh.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf ibh.buildbin-libdir && mkdir ibh.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ibh.buildbin-libdir ibh_1.12.0.tar.gz >ibh-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=ibh.buildbin-libdir --install="check:ibh-install.out" --force-multiarch --no-vignettes --timings ibh_1.12.0.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/ibh.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ibh/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ibh' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ibh' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'simpIntLists'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-bioc/meat/ibh.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'ibh' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ibh' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ibh' as ibh_1.12.0.zip
* DONE (ibh)

name	user	system	elapsed
findEntry	0.03	0.00	0.50
ibh-package	2.06	0.06	2.52
ibh	0.02	0.00	0.02
ibhBioGRID	0.23	0.00	0.23
ibhClusterEval	0.39	0.03	0.43
ibhClusterEvalBioGRID	0.85	0.02	0.85
ibhForMultipleGeneLists	0.01	0.00	0.02
ibhForMultipleGeneListsBioGRID	0.27	0.00	0.26
readDirectedInteractionsFromCsv	0	0	0
readUndirectedInteractionsFromCsv	0	0	0

name	user	system	elapsed
findEntry	0.02	0.01	0.04
ibh-package	1.95	0.02	1.96
ibh	0.01	0.00	0.02
ibhBioGRID	0.21	0.00	0.20
ibhClusterEval	0.39	0.01	0.41
ibhClusterEvalBioGRID	0.76	0.00	0.76
ibhForMultipleGeneLists	0.02	0.00	0.02
ibhForMultipleGeneListsBioGRID	0.22	0.00	0.21
readDirectedInteractionsFromCsv	0	0	0
readUndirectedInteractionsFromCsv	0.01	0.00	0.02