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BioC 2.14: CHECK report for flowBin on moscato2

This page was generated on 2014-10-08 08:56:21 -0700 (Wed, 08 Oct 2014).

Package 276/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowBin 1.0.0
Kieran O'Neill
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/flowBin
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: flowBin
Version: 1.0.0
Command: rm -rf flowBin.buildbin-libdir && mkdir flowBin.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowBin.buildbin-libdir flowBin_1.0.0.tar.gz >flowBin-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=flowBin.buildbin-libdir --install="check:flowBin-install.out" --force-multiarch --no-vignettes --timings flowBin_1.0.0.tar.gz
StartedAt: 2014-10-08 01:01:10 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 01:03:52 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 162.0 seconds
RetCode: 0
Status:  OK  
CheckDir: flowBin.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf flowBin.buildbin-libdir && mkdir flowBin.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowBin.buildbin-libdir flowBin_1.0.0.tar.gz >flowBin-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=flowBin.buildbin-libdir --install="check:flowBin-install.out" --force-multiarch --no-vignettes --timings flowBin_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/flowBin.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowBin/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowBin' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowBin' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'flowCore'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [26s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
flowBin    9.97   0.02    9.99
getBinExpr 9.39   0.00    9.39
** running examples for arch 'x64' ... [29s] OK
Examples with CPU or elapsed time > 5s
            user system elapsed
flowBin    10.90   0.03   10.94
getBinExpr 10.84   0.00   10.85
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-bioc/meat/flowBin.Rcheck/00check.log'
for details.

flowBin.Rcheck/00install.out:


install for i386

* installing *source* package 'flowBin' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowBin' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowBin' as flowBin_1.0.0.zip
* DONE (flowBin)

flowBin.Rcheck/examples_i386/flowBin-Ex.timings:

nameusersystemelapsed
checkQNorm0.990.000.98
flowBin9.970.029.99
flowFPBin0.480.030.51
getBinExpr9.390.009.39
kMeansBin0.660.010.67
mapBinsKNN0.310.000.32
quantileNormalise0.70.00.7

flowBin.Rcheck/examples_x64/flowBin-Ex.timings:

nameusersystemelapsed
checkQNorm1.030.001.03
flowBin10.90 0.0310.94
flowFPBin0.550.000.54
getBinExpr10.84 0.0010.85
kMeansBin0.560.000.56
mapBinsKNN0.280.000.28
quantileNormalise0.910.020.92