Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.14: CHECK report for ffpe on moscato2

This page was generated on 2014-10-08 08:54:34 -0700 (Wed, 08 Oct 2014).

Package 271/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ffpe 1.8.0
Levi Waldron
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/ffpe
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: ffpe
Version: 1.8.0
Command: rm -rf ffpe.buildbin-libdir && mkdir ffpe.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ffpe.buildbin-libdir ffpe_1.8.0.tar.gz >ffpe-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=ffpe.buildbin-libdir --install="check:ffpe-install.out" --force-multiarch --no-vignettes --timings ffpe_1.8.0.tar.gz
StartedAt: 2014-10-08 00:58:21 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 01:06:31 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 489.9 seconds
RetCode: 0
Status:  OK  
CheckDir: ffpe.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ffpe.buildbin-libdir && mkdir ffpe.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ffpe.buildbin-libdir ffpe_1.8.0.tar.gz >ffpe-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=ffpe.buildbin-libdir --install="check:ffpe-install.out" --force-multiarch --no-vignettes --timings ffpe_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/ffpe.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ffpe/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ffpe' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ffpe' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [33s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
CATplot 8.24   0.04    8.36
** running examples for arch 'x64' ... [38s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
CATplot      8.88   0.14    9.06
ffpe-package 5.41   0.10    5.50
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

ffpe.Rcheck/00install.out:


install for i386

* installing *source* package 'ffpe' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'graphics::image' when loading 'methylumi'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by 'graphics::image' when loading 'methylumi'

install for x64

* installing *source* package 'ffpe' ...
** testing if installed package can be loaded
Warning: replacing previous import by 'graphics::image' when loading 'methylumi'
* MD5 sums
packaged installation of 'ffpe' as ffpe_1.8.0.zip
* DONE (ffpe)

ffpe.Rcheck/examples_i386/ffpe-Ex.timings:

nameusersystemelapsed
CATplot8.240.048.36
ffpe-package3.600.033.64
sampleQC3.650.023.67
sortedIqrPlot1.590.011.60

ffpe.Rcheck/examples_x64/ffpe-Ex.timings:

nameusersystemelapsed
CATplot8.880.149.06
ffpe-package5.410.105.50
sampleQC4.320.014.34
sortedIqrPlot1.570.031.60