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BioC 2.14: INSTALL report for VanillaICE on morelia

This page was generated on 2014-10-08 09:03:19 -0700 (Wed, 08 Oct 2014).

Package 802/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VanillaICE 1.26.1
Robert Scharpf
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/VanillaICE
Last Changed Rev: 90597 / Revision: 95116
Last Changed Date: 2014-05-21 11:11:29 -0700 (Wed, 21 May 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64 [ OK ] OK  OK  OK 

Summary

Package: VanillaICE
Version: 1.26.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL VanillaICE
StartedAt: 2014-10-07 18:10:53 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 18:11:12 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 18.4 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL VanillaICE
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library’
* installing *source* package ‘VanillaICE’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c rinit.c -o rinit.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c viterbi.c -o viterbi.o
viterbi.c:108:34: warning: unused variable 'tp' [-Wunused-variable]
  double *pDeltaTempSum, Pstar, *tp;
                                 ^
viterbi.c:244:27: warning: '/*' within block comment [-Wcomment]
              /* double *pDelta, /* for viterbi */
                                 ^
viterbi.c:257:3: warning: '/*' within block comment [-Wcomment]
  /* *************************************************************************** */
  ^
viterbi.c:260:34: warning: unused variable 'tp' [-Wunused-variable]
  double *pDeltaTempSum, Pstar, *tp;
                                 ^
viterbi.c:262:13: warning: unused variable 'tt' [-Wunused-variable]
  int i,j,t,tt;
            ^
5 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so rinit.o viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.1/Resources/library/VanillaICE/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘VanillaICE.Rnw’ 
   ‘crlmmDownstream.Rnw’ 
** testing if installed package can be loaded
* DONE (VanillaICE)