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BioC 2.14: CHECK report for UniProt.ws on morelia

This page was generated on 2014-10-08 09:05:57 -0700 (Wed, 08 Oct 2014).

Package 801/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
UniProt.ws 2.4.2
Marc Carlson
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/UniProt.ws
Last Changed Rev: 91490 / Revision: 95116
Last Changed Date: 2014-06-16 15:14:52 -0700 (Mon, 16 Jun 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  TIMEOUT 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  TIMEOUT  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  TIMEOUT  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK [ TIMEOUT ] OK 

Summary

Package: UniProt.ws
Version: 2.4.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch UniProt.ws_2.4.2.tar.gz
StartedAt: 2014-10-08 02:04:45 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 02:44:45 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 2400.2 seconds
RetCode: None
Status:  TIMEOUT 
CheckDir: UniProt.ws.Rcheck
Warnings: NA

Command output

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##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch UniProt.ws_2.4.2.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-2.14-bioc/meat/UniProt.ws.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin13.1.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘UniProt.ws/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘UniProt.ws’ version ‘2.4.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘UniProt.ws’ can be installed ... [8s/126s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘RCurl’ ‘RSQLite’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  ‘AnnotationDbi:::.colsArgumentWarning’ ‘AnnotationDbi:::.resort’
  ‘BiocGenerics:::testPackage’
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.onLoad: no visible global function definition for ‘UniProt.ws’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ...

UniProt.ws.Rcheck/00install.out:

* installing *source* package ‘UniProt.ws’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (UniProt.ws)