TCC 1.4.0
Jianqiang Sun , Tomoaki Nishiyama
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/TCC | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=TCC.buildbin-libdir TCC_1.4.0.tar.gz >TCC-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=TCC.buildbin-libdir --install="check:TCC-install.out" --force-multiarch --no-vignettes --timings TCC_1.4.0.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/TCC.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TCC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TCC' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TCC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [112s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
simulateReadCounts 18.71 0.03 18.74
calcAUCValue 15.61 0.00 15.62
TCC-class 15.46 0.06 15.52
calcNormFactors 12.53 0.02 12.54
plotFCPseudocolor 12.38 0.00 12.40
plot.TCC 11.84 0.01 11.86
hypoData_mg 6.99 0.00 6.99
hypoData 5.85 0.01 5.87
** running examples for arch 'x64' ... [125s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
simulateReadCounts 21.43 0.00 21.45
calcAUCValue 16.75 0.00 16.76
TCC-class 16.07 0.03 16.10
plotFCPseudocolor 14.63 0.02 14.65
calcNormFactors 13.82 0.00 13.82
plot.TCC 11.63 0.00 11.63
hypoData_mg 8.31 0.00 8.32
hypoData 8.22 0.00 8.22
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [355s]
[356s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [445s]
[445s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
install for i386
* installing *source* package 'TCC' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'calcNormFactors' in package 'TCC'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'TCC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCC' as TCC_1.4.0.zip
* DONE (TCC)