Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

BioC 2.14: BUILD BIN report for SANTA on petty

This page was generated on 2014-10-08 09:00:45 -0700 (Wed, 08 Oct 2014).

Package 706/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SANTA 1.4.0
Alex Cornish
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/SANTA
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: SANTA
Version: 1.4.0
Command: rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SANTA_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SANTA.buildbin-libdir
StartedAt: 2014-10-08 01:33:27 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 01:33:41 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 14.0 seconds
RetCode: 0
Status:  OK 
PackageFile: SANTA_1.4.0.tgz
PackageFileSize: 438.3 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SANTA_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SANTA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SANTA.buildbin-libdir SANTA_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package ‘SANTA’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c computenetK_fewzeros.c -o computenetK_fewzeros.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c computenetK_manyzeros.c -o computenetK_manyzeros.o
computenetK_manyzeros.c: In function ‘computenetK_manyzeros’:
computenetK_manyzeros.c:29: warning: assignment from incompatible pointer type
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c computenodeAUK.c -o computenodeAUK.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c computeweights.c -o computeweights.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o SANTA.so computenetK_fewzeros.o computenetK_manyzeros.o computenodeAUK.o computeweights.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/SANTA.buildbin-libdir/SANTA/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SANTA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SANTA.buildbin-libdir/SANTA/libs//SANTA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "SANTA.buildbin-libdir/SANTA/libs//SANTA.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "SANTA.buildbin-libdir/SANTA/libs//SANTA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "SANTA.buildbin-libdir/SANTA/libs//SANTA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "SANTA.buildbin-libdir/SANTA/libs//SANTA.so"