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BioC 2.14: BUILD BIN report for Rsamtools on moscato2

This page was generated on 2014-10-08 08:53:21 -0700 (Wed, 08 Oct 2014).

Package 687/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rsamtools 1.16.1
Bioconductor Package Maintainer
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/Rsamtools
Last Changed Rev: 91340 / Revision: 95116
Last Changed Date: 2014-06-12 15:06:53 -0700 (Thu, 12 Jun 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS [ OK ]
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: Rsamtools
Version: 1.16.1
Command: cd Rsamtools.buildbin-libdir/Rsamtools && zip -r ../../Rsamtools_1.16.1.zip . & cd ../..
StartedAt: 2014-10-08 06:58:17 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 06:58:28 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 10.6 seconds
RetCode: 0
Status:  OK  
PackageFile: Rsamtools_1.16.1.zip
PackageFileSize: 7.542 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd Rsamtools.buildbin-libdir/Rsamtools && zip -r ../../Rsamtools_1.16.1.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: DESCRIPTION (188 bytes security) (deflated 41%)
  adding: doc/ (256 bytes security) (stored 0%)
  adding: doc/index.html (188 bytes security) (deflated 68%)
  adding: doc/Rsamtools-Overview.pdf (188 bytes security) (deflated 13%)
  adding: doc/Rsamtools-Overview.R (188 bytes security) (deflated 76%)
  adding: doc/Rsamtools-Overview.Rnw (188 bytes security) (deflated 62%)
  adding: doc/Rsamtools-UsingCLibraries.pdf (188 bytes security) (deflated 10%)
  adding: doc/Rsamtools-UsingCLibraries.R (188 bytes security) (deflated 48%)
  adding: doc/Rsamtools-UsingCLibraries.Rnw (188 bytes security) (deflated 57%)
  adding: extdata/ (256 bytes security) (stored 0%)
  adding: extdata/ce2dict1.fa (188 bytes security) (deflated 47%)
  adding: extdata/ce2dict1.fa.fai (188 bytes security) (deflated 44%)
  adding: extdata/ex1.bam (188 bytes security) (deflated 0%)
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  adding: extdata/ex1.bcf.bci (188 bytes security) (deflated 26%)
  adding: extdata/ex1.sam (188 bytes security) (deflated 80%)
  adding: extdata/example.gtf.gz (188 bytes security) (stored 0%)
  adding: extdata/example.gtf.gz.tbi (188 bytes security) (deflated 5%)
  adding: extdata/example_from_SAM_Spec.bam (188 bytes security) (deflated 8%)
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  adding: extdata/example_from_SAM_Spec.sam (188 bytes security) (deflated 40%)
  adding: extdata/olaps.Rda (188 bytes security) (deflated 3%)
  adding: extdata/pileup.txt (188 bytes security) (deflated 47%)
  adding: extdata/samtools-github.txt (188 bytes security) (stored 0%)
  adding: extdata/slxMaq09_urls.txt (188 bytes security) (deflated 91%)
  adding: extdata/tophat/ (256 bytes security) (stored 0%)
  adding: extdata/tophat/accepted_hits.sam (188 bytes security) (deflated 90%)
  adding: extdata/tophat/coverage.wig (188 bytes security) (deflated 78%)
  adding: extdata/tophat/junctions.bed (188 bytes security) (deflated 34%)
  adding: extdata/tophat/README (188 bytes security) (stored 0%)
  adding: help/ (256 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 85%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: help/Rsamtools.rdb (188 bytes security) (deflated 1%)
  adding: help/Rsamtools.rdx (188 bytes security) (stored 0%)
  adding: html/ (256 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 91%)
  adding: html/R.css (188 bytes security) (deflated 70%)
  adding: include/ (304 bytes security) (stored 0%)
  adding: include/samtools/ (236 bytes security) (stored 0%)
  adding: include/samtools/bam.h (176 bytes security) (deflated 70%)
  adding: include/samtools/bam_endian.h (176 bytes security) (deflated 68%)
  adding: include/samtools/bcftools/ (236 bytes security) (stored 0%)
  adding: include/samtools/bcftools/bcf.h (176 bytes security) (deflated 61%)
  adding: include/samtools/bcftools/prob1.h (176 bytes security) (deflated 59%)
  adding: include/samtools/bgzf.h (176 bytes security) (deflated 60%)
  adding: include/samtools/faidx.h (176 bytes security) (deflated 60%)
  adding: include/samtools/kaln.h (176 bytes security) (deflated 49%)
  adding: include/samtools/khash.h (176 bytes security) (deflated 75%)
  adding: include/samtools/knetfile.h (176 bytes security) (deflated 56%)
  adding: include/samtools/kprobaln.h (176 bytes security) (deflated 44%)
  adding: include/samtools/kseq.h (176 bytes security) (deflated 66%)
  adding: include/samtools/ksort.h (176 bytes security) (deflated 67%)
  adding: include/samtools/kstring.h (176 bytes security) (deflated 63%)
  adding: include/samtools/razf.h (176 bytes security) (deflated 53%)
  adding: include/samtools/sam.h (176 bytes security) (deflated 58%)
  adding: include/samtools/sam_header.h (176 bytes security) (deflated 62%)
  adding: include/tabix/ (236 bytes security) (stored 0%)
  adding: include/tabix/bgzf.h (176 bytes security) (deflated 60%)
  adding: include/tabix/knetfile.h (176 bytes security) (deflated 56%)
  adding: include/tabix/kstring.h (176 bytes security) (deflated 63%)
  adding: include/tabix/tabix.h (176 bytes security) (deflated 59%)
  adding: INDEX (188 bytes security) (deflated 66%)
  adding: libs/ (256 bytes security) (stored 0%)
  adding: libs/i386/ (256 bytes security) (stored 0%)
  adding: libs/i386/Rsamtools.dll (188 bytes security) (deflated 56%)
  adding: libs/x64/ (256 bytes security) (stored 0%)
  adding: libs/x64/Rsamtools.dll (188 bytes security) (deflated 57%)
  adding: LICENSE (188 bytes security) (deflated 41%)
  adding: MD5 (188 bytes security) (deflated 52%)
  adding: Meta/ (256 bytes security) (stored 0%)
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  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 59%)
  adding: NEWS (188 bytes security) (deflated 63%)
  adding: R/ (256 bytes security) (stored 0%)
  adding: R/Rsamtools (188 bytes security) (deflated 41%)
  adding: R/Rsamtools.rdb (188 bytes security) (deflated 38%)
  adding: R/Rsamtools.rdx (188 bytes security) (deflated 1%)
  adding: scripts/ (256 bytes security) (stored 0%)
  adding: scripts/BamViews-1000g.R (188 bytes security) (deflated 53%)
  adding: scripts/features.R (188 bytes security) (deflated 52%)
  adding: scripts/readAligned_prototype.R (188 bytes security) (deflated 67%)
  adding: scripts/remote_test.R (188 bytes security) (deflated 56%)
  adding: scripts/update-samtools.sh (188 bytes security) (deflated 66%)
  adding: unitTests/ (256 bytes security) (stored 0%)
  adding: unitTests/cases/ (256 bytes security) (stored 0%)
  adding: unitTests/cases/ex1.sam.gz (188 bytes security) (deflated 0%)
  adding: unitTests/cases/ex1_noindex.bam (188 bytes security) (deflated 0%)
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  adding: unitTests/cases/ex1_shuf1000.bam.bai (188 bytes security) (deflated 56%)
  adding: unitTests/cases/ex1_unsort.bam (188 bytes security) (deflated 0%)
  adding: unitTests/cases/ex1_zero_index.bam.bai (188 bytes security) (stored 0%)
  adding: unitTests/cases/no_header_line.vcf (188 bytes security) (deflated 56%)
  adding: unitTests/cases/no_SAMPLE_header.vcf (188 bytes security) (deflated 49%)
  adding: unitTests/cases/pileup-no-stars.txt (188 bytes security) (deflated 40%)
  adding: unitTests/cases/plp_refskip.bam (188 bytes security) (deflated 12%)
  adding: unitTests/cases/plp_refskip.bam.bai (188 bytes security) (deflated 59%)
  adding: unitTests/test_applyPileups.R (188 bytes security) (deflated 81%)
  adding: unitTests/test_asBam.R (188 bytes security) (deflated 43%)
  adding: unitTests/test_bam.R (188 bytes security) (deflated 77%)
  adding: unitTests/test_BamFile.R (188 bytes security) (deflated 79%)
  adding: unitTests/test_BamSampler.R (188 bytes security) (deflated 64%)
  adding: unitTests/test_BamViews.R (188 bytes security) (deflated 75%)
  adding: unitTests/test_bam_count.R (188 bytes security) (deflated 68%)
  adding: unitTests/test_bam_header.R (188 bytes security) (deflated 28%)
  adding: unitTests/test_BcfFile.R (188 bytes security) (deflated 69%)
  adding: unitTests/test_compression.R (188 bytes security) (deflated 65%)
  adding: unitTests/test_FaFile.R (188 bytes security) (deflated 74%)
  adding: unitTests/test_readAligned.R (188 bytes security) (deflated 70%)
  adding: unitTests/test_readPileup.R (188 bytes security) (deflated 63%)
  adding: unitTests/test_scanBamFlag.R (188 bytes security) (deflated 43%)
  adding: unitTests/test_sortBam_test.R (188 bytes security) (deflated 55%)
  adding: unitTests/test_TabixFile.R (188 bytes security) (deflated 65%)
  adding: unitTests/test_utilities.R (188 bytes security) (deflated 42%)
  adding: usretc/ (304 bytes security) (stored 0%)
  adding: usretc/i386/ (236 bytes security) (stored 0%)
  adding: usretc/i386/Rsamtools.mk (176 bytes security) (deflated 55%)
  adding: usretc/x64/ (236 bytes security) (stored 0%)
  adding: usretc/x64/Rsamtools.mk (176 bytes security) (deflated 55%)
  adding: usrlib/ (304 bytes security) (stored 0%)
  adding: usrlib/i386/ (236 bytes security) (stored 0%)
  adding: usrlib/i386/libbam.a (176 bytes security) (deflated 56%)
  adding: usrlib/i386/libbcf.a (176 bytes security) (deflated 58%)
  adding: usrlib/i386/libtabix.a (176 bytes security) (deflated 54%)
  adding: usrlib/x64/ (236 bytes security) (stored 0%)
  adding: usrlib/x64/libbam.a (176 bytes security) (deflated 56%)
  adding: usrlib/x64/libbcf.a (176 bytes security) (deflated 57%)
  adding: usrlib/x64/libtabix.a (176 bytes security) (deflated 54%)