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BioC 2.14: CHECK report for RedeR on zin2

This page was generated on 2014-10-08 08:49:12 -0700 (Wed, 08 Oct 2014).

Package 649/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RedeR 1.12.9
Mauro Castro
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/RedeR
Last Changed Rev: 93336 / Revision: 95116
Last Changed Date: 2014-08-12 17:22:34 -0700 (Tue, 12 Aug 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: RedeR
Version: 1.12.9
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings RedeR_1.12.9.tar.gz
StartedAt: 2014-10-08 02:15:44 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 02:16:20 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 36.6 seconds
RetCode: 0
Status:  OK 
CheckDir: RedeR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings RedeR_1.12.9.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-2.14-bioc/meat/RedeR.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.12.9’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... [3s/3s] OK
* checking installed package size ... NOTE
  installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data   3.2Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.14-bioc/meat/RedeR.Rcheck/00check.log’
for details.

RedeR.Rcheck/00install.out:

* installing *source* package ‘RedeR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RedeR)

RedeR.Rcheck/RedeR-Ex.timings:

nameusersystemelapsed
RedPort-class0.0000.0000.002
RedPort0.0000.0000.001
RedeR.data0.5640.0080.571
addEdgeBetweenContainers0.0040.0000.003
addEdges0.0000.0000.001
addGraph0.0000.0000.002
addLegend0.0000.0000.002
addNodes0.0040.0000.001
addSeries0.0000.0000.002
addSubgraph0.0000.0000.002
addSubgraph.list0.0000.0040.001
att0.0680.0040.072
calld0.0040.0000.002
cea0.0480.0040.052
deSelectEdges0.0040.0000.002
deSelectGraph0.0000.0000.002
deSelectNodes0.0000.0000.001
deleteEdges0.0040.0000.002
deleteNodes0.0000.0000.001
deleteSelectedEdges0.0040.0000.002
deleteSelectedNodes0.0000.0000.001
duplicateGraph0.0000.0000.001
exitd0.0040.0000.001
getContainerComponets0.0040.0000.003
getEdgeIDs0.0000.0000.001
getEdges0.0000.0000.001
getGraph0.0000.0000.001
getNodeIDs0.0000.0000.001
getNodes0.0040.0000.001
getSourceEdgeIDs0.0000.0000.001
getTargetEdgeIDs0.0000.0000.002
gtoy.rm000
isDynamicsActive0.0000.0000.002
mergeNodes0.0040.0000.001
mergeOutEdges0.0000.0000.002
nestNodes0.0000.0000.001
nesthc000
ping0.0000.0000.001
relax0.0040.0000.010
resetd0.0000.0040.001
selectAllEdges0.0000.0000.001
selectAllNodes0.0000.0000.002
selectEdges0.0040.0000.001
selectGraph0.0000.0000.002
selectNodes0.0000.0000.002
setArrowDirection0.0040.0000.001
subg0.0800.0080.088
updateContainerSize0.0040.0000.001
updateGraph0.0000.0000.001
version0.0040.0000.001