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BioC 2.14: CHECK report for RTN on morelia

This page was generated on 2014-10-08 09:06:43 -0700 (Wed, 08 Oct 2014).

Package 694/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTN 1.2.7
Mauro Castro
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/RTN
Last Changed Rev: 93334 / Revision: 95116
Last Changed Date: 2014-08-12 17:21:26 -0700 (Tue, 12 Aug 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: RTN
Version: 1.2.7
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RTN_1.2.7.tar.gz
StartedAt: 2014-10-08 01:24:35 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 01:27:20 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 165.6 seconds
RetCode: 0
Status:  OK 
CheckDir: RTN.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RTN_1.2.7.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-2.14-bioc/meat/RTN.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin13.1.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTN/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTN’ version ‘1.2.7’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTN’ can be installed ... [11s/11s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [16s/16s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘runTests.R’ [5s/5s]
 [5s/5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

RTN.Rcheck/00install.out:

* installing *source* package ‘RTN’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RTN)

RTN.Rcheck/RTN-Ex.timings:

nameusersystemelapsed
AVS-class0.0010.0000.001
RTN.data0.6790.0190.699
TNA-class0.0010.0000.000
TNI-class0.6220.0120.634
avs.evse0.0010.0000.001
avs.get0.0010.0000.001
avs.plot10.0010.0000.000
avs.plot20.0010.0000.000
avs.preprocess0.0010.0000.001
avs.vse0.0010.0000.001
tna.get0.6000.0100.611
tna.graph0.4830.0100.492
tna.gsea10.4850.0090.494
tna.gsea20.5940.0100.604
tna.mra0.4790.0090.488
tna.overlap0.4700.0090.479
tna.plot.gsea10.4470.0090.456
tna.plot.gsea20.4210.0100.431
tna.shadow0.4480.0080.457
tna.synergy0.4750.0090.486
tni.bootstrap0.4490.0080.458
tni.conditional0.4650.0090.474
tni.dpi.filter0.4920.0080.500
tni.get0.4690.0080.485
tni.graph0.4980.0100.522
tni.permutation0.4900.0090.500
tni.preprocess1.3140.0461.369
tni2tna.preprocess0.6130.0140.627