NarrowPeaks 1.8.0
Pedro Madrigal
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/NarrowPeaks | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | [ OK ] |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NarrowPeaks_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NarrowPeaks.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NarrowPeaks.buildbin-libdir NarrowPeaks_1.8.0.tar.gz'
>>>>>>>
* installing *source* package ‘NarrowPeaks’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c wig2CSARScore.c -o wig2CSARScore.o
wig2CSARScore.c:240:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
for(i=i;i<x+span_c;i++){
˜^˜
wig2CSARScore.c:246:10: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
˜^˜
wig2CSARScore.c:267:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
for(i=i;i<x+span_c;i++){
˜^˜
wig2CSARScore.c:273:10: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
˜^˜
wig2CSARScore.c:352:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
for(i=i;i<start_c+span_c;i++){
˜^˜
wig2CSARScore.c:359:10: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
˜^˜
wig2CSARScore.c:380:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
for(i=i;i<start_c+span_c;i++){
˜^˜
wig2CSARScore.c:387:10: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
for(i=i;i<=chrL[m];i++)
˜^˜
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c wig2CSARScore_R_wrapper.c -o wig2CSARScore_R_wrapper.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o NarrowPeaks.so wig2CSARScore.o wig2CSARScore_R_wrapper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/NarrowPeaks.buildbin-libdir/NarrowPeaks/libs
** R
** data
** inst
** preparing package for lazy loading
No methods found in "GenomicRanges" for requests: unique, unlist
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "GenomicRanges" for requests: unique, unlist
* DONE (NarrowPeaks)
>>>>>>>
>>>>>>> FIXING LINKS FOR NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"