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BioC 2.14: CHECK report for IRanges on zin2

This page was generated on 2014-10-08 08:47:37 -0700 (Wed, 08 Oct 2014).

Package 421/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IRanges 1.22.10
Bioconductor Package Maintainer
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/IRanges
Last Changed Rev: 92937 / Revision: 95116
Last Changed Date: 2014-07-28 13:34:45 -0700 (Mon, 28 Jul 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: IRanges
Version: 1.22.10
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings IRanges_1.22.10.tar.gz
StartedAt: 2014-10-08 00:37:38 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 00:40:19 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 160.8 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: IRanges.Rcheck
Warnings: 3

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings IRanges_1.22.10.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-2.14-bioc/meat/IRanges.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IRanges/DESCRIPTION’ ... OK
* this is package ‘IRanges’ version ‘1.22.10’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IRanges’ can be installed ... [20s/21s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘methods’ ‘utils’ ‘stats’ ‘BiocGenerics’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  ‘stats:::na.exclude.data.frame’ ‘stats:::na.omit.data.frame’
  ‘stats:::window.default’
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... WARNING
Found .Internal calls in the following functions:
  ‘isNotSorted’ ‘isNotStrictlySorted’
with calls to .Internal functions
  ‘is.unsorted’

Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘duplicated.CompressedList’ ‘phead’ ‘ptail’ ‘sort.List’
  ‘unique.CompressedList’
Undocumented S4 methods:
  generic '!' and siglist 'CompressedList'
  generic '!' and siglist 'List'
  generic '<=' and siglist 'List,List'
  generic '<=' and siglist 'List,list'
  generic '<=' and siglist 'list,List'
  generic '==' and siglist 'List,List'
  generic '==' and siglist 'List,list'
  generic '==' and siglist 'list,List'
  generic 'Rle' and siglist 'Rle,missing'
  generic 'anyNA' and siglist 'Rle'
  generic 'anyNA' and siglist 'Vector'
  generic 'coerce' and siglist 'Hits,IntegerList'
  generic 'compare' and siglist 'List,List'
  generic 'compare' and siglist 'List,list'
  generic 'compare' and siglist 'list,List'
  generic 'countMatches' and siglist 'ANY'
  generic 'duplicated' and siglist 'CompressedList'
  generic 'duplicated' and siglist 'List'
  generic 'extractList' and siglist 'ANY'
  generic 'findMatches' and siglist 'ANY'
  generic 'is.na' and siglist 'CompressedList'
  generic 'is.na' and siglist 'List'
  generic 'match' and siglist 'CompressedList,list'
  generic 'match' and siglist 'CompressedList,vector'
  generic 'match' and siglist 'List,List'
  generic 'match' and siglist 'List,Vector'
  generic 'match' and siglist 'List,list'
  generic 'match' and siglist 'List,vector'
  generic 'match' and siglist 'list,List'
  generic 'order' and siglist 'List'
  generic 'rank' and siglist 'List'
  generic 'relistToClass' and siglist 'DataFrame'
  generic 'relistToClass' and siglist 'Hits'
  generic 'relistToClass' and siglist 'data.frame'
  generic 'selfmatch' and siglist 'Hits'
  generic 'sort' and siglist 'List'
  generic 'splitAsListReturnedClass' and siglist 'DataFrame'
  generic 'splitAsListReturnedClass' and siglist 'Hits'
  generic 'splitAsListReturnedClass' and siglist 'data.frame'
  generic 'unique' and siglist 'CompressedList'
  generic 'unique' and siglist 'List'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... WARNING
File ‘/home/biocbuild/bbs-2.14-bioc/meat/IRanges.Rcheck/IRanges/libs/IRanges.so’:
  Found ‘abort’, possibly from ‘abort’ (C)
    Object: ‘errabort.o’
  Found ‘exit’, possibly from ‘exit’ (C)
    Object: ‘errabort.o’
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘errabort.o’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Objects: ‘IntervalTree.o’, ‘common.o’, ‘errabort.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘IRanges_unit_tests.R’ [39s/40s]
 [39s/40s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.14-bioc/meat/IRanges.Rcheck/00check.log’
for details.

IRanges.Rcheck/00install.out:

* installing *source* package ‘IRanges’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c AEbufs.c -o AEbufs.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c CompressedList_class.c -o CompressedList_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c DataFrame_class.c -o DataFrame_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c GappedRanges_class.c -o GappedRanges_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Grouping_class.c -o Grouping_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Hits_class.c -o Hits_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c IRanges_class.c -o IRanges_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c IRanges_constructor.c -o IRanges_constructor.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c IntervalTree.c -o IntervalTree.o
IntervalTree.c: In function ‘_IntegerIntervalTree_overlap_first’:
IntervalTree.c:500:20: warning: variable ‘nhits’ set but not used [-Wunused-but-set-variable]
IntervalTree.c: In function ‘_IntegerIntervalTree_overlap_last’:
IntervalTree.c:574:20: warning: variable ‘nhits’ set but not used [-Wunused-but-set-variable]
IntervalTree.c: In function ‘_IntegerIntervalTree_overlap’:
IntervalTree.c:365:3: warning: ‘result_inds’ may be used uninitialized in this function [-Wuninitialized]
IntervalTree.c: In function ‘_IntegerIntervalForest_overlap’:
IntervalTree.c:393:17: warning: ‘result_inds’ may be used uninitialized in this function [-Wuninitialized]
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c R_init_IRanges.c -o R_init_IRanges.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c RangedData_class.c -o RangedData_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Ranges_class.c -o Ranges_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Ranges_comparison.c -o Ranges_comparison.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c RleViews_utils.c -o RleViews_utils.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Rle_class.c -o Rle_class.o
Rle_class.c: In function ‘compute_CHARSXP_runs’:
Rle_class.c:132:31: warning: ‘val0’ may be used uninitialized in this function [-Wuninitialized]
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Rle_utils.c -o Rle_utils.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c SEXP_utils.c -o SEXP_utils.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c SimpleList_class.c -o SimpleList_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c SimpleRangesList_class.c -o SimpleRangesList_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Vector_class.c -o Vector_class.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c anyMissing.c -o anyMissing.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c common.c -o common.o
common.c: In function ‘firstWordInFile’:
common.c:1787:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c compact_bitvector.c -o compact_bitvector.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c coverage_methods.c -o coverage_methods.o
coverage_methods.c: In function ‘compute_coverage_from_IRanges_holder’:
coverage_methods.c:501:37: warning: ‘x_end’ may be used uninitialized in this function [-Wuninitialized]
coverage_methods.c:417:21: note: ‘x_end’ was declared here
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c dlist.c -o dlist.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c errabort.c -o errabort.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c hash_utils.c -o hash_utils.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c int_utils.c -o int_utils.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c inter_range_methods.c -o inter_range_methods.o
inter_range_methods.c: In function ‘reduce_ranges’:
inter_range_methods.c:177:21: warning: ‘revmap_elt’ may be used uninitialized in this function [-Wuninitialized]
inter_range_methods.c:183:35: warning: ‘delta’ may be used uninitialized in this function [-Wuninitialized]
inter_range_methods.c:166:11: warning: ‘gapwidth’ may be used uninitialized in this function [-Wuninitialized]
inter_range_methods.c:168:14: warning: ‘max_end’ may be used uninitialized in this function [-Wuninitialized]
inter_range_methods.c:143:6: warning: ‘append_or_drop’ may be used uninitialized in this function [-Wuninitialized]
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c localmem.c -o localmem.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c memalloc.c -o memalloc.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c rbTree.c -o rbTree.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c safe_arithm.c -o safe_arithm.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c sort_utils.c -o sort_utils.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c str_utils.c -o str_utils.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c ucsc_handlers.c -o ucsc_handlers.o
gcc -std=gnu99 -shared -L/usr/local/lib -o IRanges.so AEbufs.o CompressedIRangesList_class.o CompressedList_class.o DataFrame_class.o GappedRanges_class.o Grouping_class.o Hits_class.o IRanges_class.o IRanges_constructor.o IntervalTree.o R_init_IRanges.o RangedData_class.o Ranges_class.o Ranges_comparison.o RleViews_utils.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o SimpleRangesList_class.o Vector_class.o anyMissing.o common.o compact_bitvector.o coverage_methods.o dlist.o errabort.o hash_utils.o int_utils.o inter_range_methods.o localmem.o memalloc.o rbTree.o safe_arithm.o sort_utils.o str_utils.o ucsc_handlers.o -L/home/biocbuild/bbs-2.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.14-bioc/meat/IRanges.Rcheck/IRanges/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘head’ from package ‘utils’ in package ‘IRanges’
Creating a generic function for ‘tail’ from package ‘utils’ in package ‘IRanges’
Creating a generic function for ‘window’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘window<-’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘rev’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘subset’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘with’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘aggregate’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘%in%’ from package ‘base’ in package ‘IRanges’
Creating a new generic function for ‘findMatches’ in package ‘IRanges’
Creating a generic function for ‘as.list’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘stack’ from package ‘utils’ in package ‘IRanges’
Creating a generic function for ‘within’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘start’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘end’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘as.matrix’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘na.omit’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘na.exclude’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘merge’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘by’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘mean’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘which.max’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘which.min’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘which’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘ifelse’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘diff’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘var’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘cov’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘cor’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘sd’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘median’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘mad’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘IQR’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘substr’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘substring’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘chartr’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘tolower’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘toupper’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘sub’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘gsub’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘levels’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘droplevels’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘split’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘unsplit’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘split<-’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘drop’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘quantile’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘rownames<-’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘colnames<-’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘as.table’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘t’ from package ‘base’ in package ‘IRanges’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IRanges)

IRanges.Rcheck/IRanges-Ex.timings:

nameusersystemelapsed
AtomicList-class0.2760.0080.287
DataFrame-class0.3840.0080.395
DataTable-API0.0000.0000.001
DataTable-stats0.0120.0000.012
FilterRules-class0.1080.0000.108
GappedRanges-class0.1160.0000.119
Grouping-class0.0640.0000.065
Hits-class0.0440.0000.044
IRanges-class1.3000.0281.327
IRanges-constructor0.0400.0000.038
IRanges-utils1.1960.0081.206
IRangesList-class0.0480.0000.047
IntervalForest-class0.0360.0000.033
IntervalTree-class0.0480.0000.047
List-class0.0040.0000.005
MaskCollection-class0.0960.0040.102
RDApplyParams-class0.6520.0000.656
RangedData-class1.2760.0041.282
RangedDataList-class0.0560.0000.056
RangedSelection-class0.0200.0040.023
Ranges-class0.0560.0040.060
Ranges-comparison0.0800.0040.086
RangesList-class0.0640.0000.064
Rle-class0.1520.0000.153
RleViews-class0.0640.0000.065
RleViewsList-class0.0640.0000.064
SimpleList-class0.0040.0000.006
Vector-class0.0040.0000.004
Vector-comparison0.0760.0000.074
Views-class0.0760.0000.075
ViewsList-class0.0000.0000.001
classNameForDisplay-methods0.0120.0000.014
coverage-methods0.1920.0040.199
endoapply0.0040.0000.007
expand-methods0.1640.0040.169
extractList0.1080.0000.109
findOverlaps-methods0.3360.0080.347
funprog-methods0.0560.0000.054
inter-range-methods0.9840.0040.990
intra-range-methods0.2800.0120.292
isConstant0.0040.0000.004
multisplit0.0200.0000.018
nearest-methods0.0520.0000.050
read.Mask0.0440.0000.043
reverse-methods0.1000.0000.099
runstat0.0480.0000.047
seqapply0.0720.0000.070
setops-methods0.2480.0040.252
slice-methods0.0240.0000.025
str-utils0.0040.0000.006
view-summarization-methods0.0240.0040.025