Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.14: BUILD BIN report for GeneNetworkBuilder on petty

This page was generated on 2014-10-08 09:00:23 -0700 (Wed, 08 Oct 2014).

Package 320/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneNetworkBuilder 1.6.1
Jianhong Ou
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/GeneNetworkBuilder
Last Changed Rev: 92730 / Revision: 95116
Last Changed Date: 2014-07-22 18:26:50 -0700 (Tue, 22 Jul 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: GeneNetworkBuilder
Version: 1.6.1
Command: rm -rf GeneNetworkBuilder.buildbin-libdir && mkdir GeneNetworkBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneNetworkBuilder_1.6.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneNetworkBuilder.buildbin-libdir
StartedAt: 2014-10-08 01:22:06 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 01:22:23 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 16.9 seconds
RetCode: 0
Status:  OK 
PackageFile: GeneNetworkBuilder_1.6.1.tgz
PackageFileSize: 3.141 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GeneNetworkBuilder.buildbin-libdir && mkdir GeneNetworkBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneNetworkBuilder_1.6.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneNetworkBuilder.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneNetworkBuilder.buildbin-libdir GeneNetworkBuilder_1.6.1.tar.gz'
>>>>>>> 

* installing *source* package ‘GeneNetworkBuilder’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c geneTree.cpp -o geneTree.o
geneTree.cpp: In member function ‘void GTree::ChangeTolerance(node*)’:
geneTree.cpp:112: warning: comparison between signed and unsigned integer expressions
geneTree.cpp: In member function ‘std::vector<node*, std::allocator<node*> > GTree::Travel()’:
geneTree.cpp:207: warning: comparison between signed and unsigned integer expressions
geneTree.cpp: In member function ‘void GTree::verifyFilter(int)’:
geneTree.cpp:275: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c nodefilter.cpp -o nodefilter.o
nodefilter.cpp: In function ‘SEXPREC* filterNodes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’:
nodefilter.cpp:76: warning: comparison between signed and unsigned integer expressions
nodefilter.cpp:86: warning: comparison between signed and unsigned integer expressions
nodefilter.cpp:94: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o GeneNetworkBuilder.so geneTree.o nodefilter.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneNetworkBuilder)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"