GeneAnswers 2.6.2
Gang Feng , Pan Du and Tian Xia
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/GeneAnswers | | Last Changed Rev: 93462 / Revision: 95116 | | Last Changed Date: 2014-08-18 15:04:21 -0700 (Mon, 18 Aug 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
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### Running command:
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### rm -rf GeneAnswers.buildbin-libdir && mkdir GeneAnswers.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GeneAnswers.buildbin-libdir GeneAnswers_2.6.2.tar.gz >GeneAnswers-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=GeneAnswers.buildbin-libdir --install="check:GeneAnswers-install.out" --force-multiarch --no-vignettes --timings GeneAnswers_2.6.2.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/GeneAnswers.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneAnswers/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GeneAnswers' version '2.6.2'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'igraph' 'RCurl' 'annotate' 'Biobase' 'XML' 'RSQLite' 'MASS'
'Heatplus' 'RColorBrewer'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GeneAnswers' can be installed ... OK
* checking installed package size ... NOTE
installed size is 35.3Mb
sub-directories of 1Mb or more:
External 32.4Mb
data 1.0Mb
doc 1.4Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'annotate'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [458s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
geneAnswersReadable 51.53 0.86 52.38
GeneAnswers-class 27.42 0.69 28.13
getConnectedGraph 24.45 0.63 25.07
geneAnswersSort 24.09 0.60 24.68
GeneAnswers-package 23.03 0.45 23.49
geneAnswersConceptRelation 22.95 0.53 23.48
geneAnswersHeatmap 22.87 0.51 23.39
getMultiLayerGraphIDs 22.32 0.63 22.98
geneAnswersChartPlots 22.21 0.67 22.89
geneAnswersConcepts 22.25 0.55 22.79
buildNet 22.18 0.44 22.62
geneAnswersHomoMapping 22.05 0.56 22.62
geneAnswersBuilder 21.92 0.42 22.33
geneAnswersConceptNet 20.80 0.67 21.47
getGOList 13.29 0.81 88.67
** running examples for arch 'x64' ... [407s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
geneAnswersReadable 62.69 1.31 64.03
GeneAnswers-class 30.06 1.00 31.06
buildNet 25.33 0.50 25.85
GeneAnswers-package 25.24 0.44 25.68
geneAnswersChartPlots 24.68 0.63 25.30
getConnectedGraph 23.99 0.49 24.47
geneAnswersConcepts 23.71 0.46 24.17
geneAnswersConceptNet 23.29 0.67 23.98
geneAnswersHeatmap 23.32 0.59 23.92
geneAnswersHomoMapping 22.89 0.67 23.55
geneAnswersBuilder 22.58 0.48 23.06
getMultiLayerGraphIDs 22.28 0.59 22.87
geneAnswersSort 22.22 0.65 22.87
geneAnswersConceptRelation 21.04 0.54 21.59
getGOList 12.78 0.34 13.13
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 3 notes.
See
'E:/biocbld/bbs-2.14-bioc/meat/GeneAnswers.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'GeneAnswers' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'GeneAnswers' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneAnswers' as GeneAnswers_2.6.2.zip
* DONE (GeneAnswers)