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BioC 2.14: INSTALL report for GOSemSim on zin2

This page was generated on 2014-10-08 08:48:32 -0700 (Wed, 08 Oct 2014).

Package 356/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOSemSim 1.22.0
Guangchuang Yu
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/GOSemSim
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64 [ OK ] OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: GOSemSim
Version: 1.22.0
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD INSTALL GOSemSim
StartedAt: 2014-10-07 18:04:48 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 18:04:59 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 11.2 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD INSTALL GOSemSim
###
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* installing to library ‘/home/biocbuild/bbs-2.14-bioc/R/library’
* installing *source* package ‘GOSemSim’ ...
** libs
g++ -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-2.14-bioc/R/library/Rcpp/include"   -fpic  -g -O2  -Wall -c ICmethod.cpp -o ICmethod.o
ICmethod.cpp: In function ‘SEXPREC* infoContentMethod_cpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
ICmethod.cpp:20:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:38:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:48:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:70:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:71:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:78:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:79:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
/home/biocbuild/bbs-2.14-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:441:2: warning: ‘sim’ may be used uninitialized in this function [-Wuninitialized]
ICmethod.cpp:91:10: note: ‘sim’ was declared here
ICmethod.cpp:108:50: warning: ‘ic2’ may be used uninitialized in this function [-Wuninitialized]
ICmethod.cpp:108:50: warning: ‘ic1’ may be used uninitialized in this function [-Wuninitialized]
g++ -shared -L/usr/local/lib -o GOSemSim.so ICmethod.o -L/home/biocbuild/bbs-2.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.14-bioc/R/library/GOSemSim/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GOSemSim)