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BioC 2.14: CHECK report for AffyCompatible on petty

This page was generated on 2014-10-08 08:58:20 -0700 (Wed, 08 Oct 2014).

Package 16/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AffyCompatible 1.24.1
Martin Morgan
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/AffyCompatible
Last Changed Rev: 89252 / Revision: 95116
Last Changed Date: 2014-04-19 12:00:56 -0700 (Sat, 19 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ] OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: AffyCompatible
Version: 1.24.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch AffyCompatible_1.24.1.tar.gz
StartedAt: 2014-10-07 20:33:29 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 20:39:05 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 336.5 seconds
RetCode: 0
Status:  OK 
CheckDir: AffyCompatible.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch AffyCompatible_1.24.1.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-2.14-bioc/meat/AffyCompatible.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘AffyCompatible/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AffyCompatible’ version ‘1.24.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AffyCompatible’ can be installed ... [61s/65s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [42s/52s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
NetAffxResource-class 25.152  0.424  34.432
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

AffyCompatible.Rcheck/00install.out:

* installing *source* package ‘AffyCompatible’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (AffyCompatible)

AffyCompatible.Rcheck/AffyCompatible-Ex.timings:

nameusersystemelapsed
AffyCompatible-class0.0030.0000.003
NetAffxResource-class25.152 0.42434.432
readArr0.8830.0420.952
readMage3.5760.0204.111
readNetAffx0.0010.0000.001
readXml0.1800.0030.205
xclass0.3210.0080.375
zzz-ARRCompatibility-class0.0040.0010.005
zzz-DTTCompatibility-class0.1010.0230.146
zzz-NetAffxCompatibility-class0.0040.0010.005