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BioC 2.13: CHECK report for staRank on moscato1

This page was generated on 2014-04-05 09:50:51 -0700 (Sat, 05 Apr 2014).

Package 694/750HostnameOS / ArchBUILDCHECKBUILD BIN
staRank 1.4.0
Juliane Siebourg
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/staRank
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: staRank
Version: 1.4.0
Command: rm -rf staRank.buildbin-libdir && mkdir staRank.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=staRank.buildbin-libdir staRank_1.4.0.tar.gz >staRank-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=staRank.buildbin-libdir --install="check:staRank-install.out" --force-multiarch --no-vignettes --timings staRank_1.4.0.tar.gz && mv staRank.buildbin-libdir/* staRank.Rcheck/ && rmdir staRank.buildbin-libdir
StartedAt: 2014-04-05 07:00:10 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 07:05:51 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 340.4 seconds
RetCode: 0
Status:  OK  
CheckDir: staRank.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/staRank.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'staRank/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'staRank' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'staRank' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [14s] OK
** running examples for arch 'x64' ... [17s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

staRank.Rcheck/00install.out:


install for i386

* installing *source* package 'staRank' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'staRank'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'staRank' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'staRank' as staRank_1.4.0.zip
* DONE (staRank)

staRank.Rcheck/examples_i386/staRank-Ex.timings:

nameusersystemelapsed
RankSummary-class0.320.000.31
aggregRank0.340.000.34
dataFormatRSA0.140.000.14
getRankmatrix0.140.000.14
getSampleScores-methods0.150.000.14
getStability0.140.000.14
mwTest2samp000
runRSA0.140.000.14
staRank-package0.340.000.35
stabilityRanking-methods0.140.000.14
summary-methods0.120.000.12
summaryStats-methods0.120.000.12
uniqueRSARanking0.160.000.15

staRank.Rcheck/examples_x64/staRank-Ex.timings:

nameusersystemelapsed
RankSummary-class0.560.000.57
aggregRank0.950.000.95
dataFormatRSA0.150.000.16
getRankmatrix0.170.000.17
getSampleScores-methods0.160.000.15
getStability0.150.000.16
mwTest2samp0.020.000.01
runRSA0.150.000.16
staRank-package0.160.000.16
stabilityRanking-methods0.170.000.17
summary-methods0.250.000.25
summaryStats-methods0.250.000.25
uniqueRSARanking0.250.000.25