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BioC 2.13: CHECK report for rHVDM on moscato1

This page was generated on 2014-04-05 09:49:26 -0700 (Sat, 05 Apr 2014).

Package 602/750HostnameOS / ArchBUILDCHECKBUILD BIN
rHVDM 1.28.0
Martino Barenco
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/rHVDM
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: rHVDM
Version: 1.28.0
Command: rm -rf rHVDM.buildbin-libdir && mkdir rHVDM.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rHVDM.buildbin-libdir rHVDM_1.28.0.tar.gz >rHVDM-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=rHVDM.buildbin-libdir --install="check:rHVDM-install.out" --force-multiarch --no-vignettes --timings rHVDM_1.28.0.tar.gz && mv rHVDM.buildbin-libdir/* rHVDM.Rcheck/ && rmdir rHVDM.buildbin-libdir
StartedAt: 2014-04-05 06:20:33 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 06:24:42 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 249.0 seconds
RetCode: 0
Status:  OK  
CheckDir: rHVDM.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/rHVDM.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rHVDM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rHVDM' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rHVDM' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
  'rHVDM.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [81s] OK
Examples with CPU or elapsed time > 5s
              user system elapsed
fitgene.nl   21.92   0.00   21.94
screening.nl 21.15   0.01   21.17
training.nl  19.67   0.01   19.68
estimerrors   5.58   0.53    6.12
** running examples for arch 'x64' ... [77s] OK
Examples with CPU or elapsed time > 5s
              user system elapsed
screening.nl 21.35   0.01   21.37
fitgene.nl   21.12   0.04   21.17
training.nl  19.41   0.00   19.40
estimerrors   5.19   0.53    5.74
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/rHVDM.Rcheck/00check.log'
for details.

rHVDM.Rcheck/00install.out:


install for i386

* installing *source* package 'rHVDM' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'rHVDM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rHVDM' as rHVDM_1.28.0.zip
* DONE (rHVDM)

rHVDM.Rcheck/examples_i386/rHVDM-Ex.timings:

nameusersystemelapsed
HVDMcheck0.670.020.69
HVDMreport1.770.061.82
estimerrors5.580.536.12
fitgene1.420.001.42
fitgene.lin1.230.001.23
fitgene.nl21.92 0.0021.94
screening2.650.002.65
screening.nl21.15 0.0121.17
training1.870.041.90
training.nl19.67 0.0119.68

rHVDM.Rcheck/examples_x64/rHVDM-Ex.timings:

nameusersystemelapsed
HVDMcheck0.440.000.43
HVDMreport1.280.021.29
estimerrors5.190.535.74
fitgene1.190.011.20
fitgene.lin1.290.001.30
fitgene.nl21.12 0.0421.17
screening1.950.031.98
screening.nl21.35 0.0121.37
training1.330.001.33
training.nl19.41 0.0019.40