BioC 2.13: CHECK report for pathRender on moscato1

Package: pathRender

Version: 1.30.0

Command: rm -rf pathRender.buildbin-libdir && mkdir pathRender.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pathRender.buildbin-libdir pathRender_1.30.0.tar.gz >pathRender-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=pathRender.buildbin-libdir --install="check:pathRender-install.out" --force-multiarch --no-vignettes --timings pathRender_1.30.0.tar.gz && mv pathRender.buildbin-libdir/* pathRender.Rcheck/ && rmdir pathRender.buildbin-libdir

StartedAt: 2014-04-05 05:42:28 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 05:45:07 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 159.0 seconds

RetCode: 0

Status:  OK

CheckDir: pathRender.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/pathRender.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pathRender/DESCRIPTION' ... OK
* this is package 'pathRender' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pathRender' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'RColorBrewer' 'cMAP' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
  'pathRender.Rnw', 'plotExG.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [13s] OK
** running examples for arch 'x64' ... [15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/pathRender.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'pathRender' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'graphics::plot' when loading 'pathRender'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by 'graphics::plot' when loading 'pathRender'

install for x64

* installing *source* package 'pathRender' ...
** testing if installed package can be loaded
Warning: replacing previous import by 'graphics::plot' when loading 'pathRender'
* MD5 sums
packaged installation of 'pathRender' as pathRender_1.30.0.zip
* DONE (pathRender)

name	user	system	elapsed
colorNodes	0.29	0.00	0.61
coloredGraph-class	0.2	0.0	0.2
graphcMAP	0.56	0.00	0.87
plotExGraph	2.81	0.06	2.94
pwayGraph-class	0.31	0.00	0.31
reduceES	2.26	0.06	2.33
rendercMAP	1.35	0.02	1.38

name	user	system	elapsed
colorNodes	0.39	0.00	0.39
coloredGraph-class	0.19	0.00	0.19
graphcMAP	0.87	0.01	0.89
plotExGraph	3.60	0.14	3.74
pwayGraph-class	0.15	0.00	0.15
reduceES	1.59	0.06	1.65
rendercMAP	1.48	0.02	1.50