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BioC 2.13: CHECK report for impute on zin1

This page was generated on 2014-04-05 09:47:03 -0700 (Sat, 05 Apr 2014).

Package 369/750HostnameOS / ArchBUILDCHECKBUILD BIN
impute 1.36.0
Balasubramanian Narasimhan
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/impute
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: impute
Version: 1.36.0
Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings impute_1.36.0.tar.gz
StartedAt: 2014-04-05 01:57:17 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 01:57:28 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 11.8 seconds
RetCode: 0
Status:  OK 
CheckDir: impute.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.13-bioc/meat/impute.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘impute/DESCRIPTION’ ... OK
* this is package ‘impute’ version ‘1.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘impute’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... OK

impute.Rcheck/00install.out:

* installing *source* package ‘impute’ ...
** libs
gfortran   -fpic  -g -O2  -Wall -c knnimpute.f -o knnimpute.o
Warning: Nonconforming tab character in column 1 of line 89
Warning: Nonconforming tab character in column 1 of line 91
Warning: Nonconforming tab character in column 1 of line 92
Warning: Nonconforming tab character in column 1 of line 93
Warning: Nonconforming tab character in column 1 of line 94
Warning: Nonconforming tab character in column 1 of line 95
Warning: Nonconforming tab character in column 1 of line 96
Warning: Nonconforming tab character in column 1 of line 97
Warning: Nonconforming tab character in column 1 of line 98
Warning: Nonconforming tab character in column 3 of line 99
Warning: Nonconforming tab character in column 1 of line 100
Warning: Nonconforming tab character in column 1 of line 101
Warning: Nonconforming tab character in column 1 of line 102
Warning: Nonconforming tab character in column 1 of line 103
Warning: Nonconforming tab character in column 3 of line 104
Warning: Nonconforming tab character in column 1 of line 105
Warning: Nonconforming tab character in column 1 of line 106
Warning: Nonconforming tab character in column 1 of line 107
Warning: Nonconforming tab character in column 1 of line 108
Warning: Nonconforming tab character in column 1 of line 109
Warning: Nonconforming tab character in column 1 of line 110
Warning: Nonconforming tab character in column 1 of line 111
Warning: Nonconforming tab character in column 1 of line 112
Warning: Nonconforming tab character in column 3 of line 113
Warning: Nonconforming tab character in column 1 of line 114
Warning: Nonconforming tab character in column 1 of line 115
Warning: Nonconforming tab character in column 1 of line 116
Warning: Nonconforming tab character in column 1 of line 117
Warning: Nonconforming tab character in column 3 of line 118
Warning: Nonconforming tab character in column 3 of line 119
Warning: Nonconforming tab character in column 3 of line 120
Warning: Nonconforming tab character in column 1 of line 121
Warning: Nonconforming tab character in column 1 of line 122
knnimpute.f: In function ‘twomis’:
knnimpute.f:168:0: warning: ‘dold’ may be used uninitialized in this function [-Wuninitialized]
gcc -std=gnu99 -shared -L/usr/local/lib -o impute.so knnimpute.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-2.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.13-bioc/meat/impute.Rcheck/impute/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (impute)

impute.Rcheck/impute-Ex.timings:

nameusersystemelapsed
impute.knn0.8360.0080.843
khanmiss0.1680.0000.170