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BioC 2.13: BUILD BIN report for flowType on perceval

This page was generated on 2014-04-05 09:52:39 -0700 (Sat, 05 Apr 2014).

Package 263/750HostnameOS / ArchBUILDCHECKBUILD BIN
flowType 2.2.1
Nima Aghaeepour
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/flowType
Last Changed Rev: 86057 / Revision: 88450
Last Changed Date: 2014-02-04 10:03:14 -0800 (Tue, 04 Feb 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: flowType
Version: 2.2.1
Command: rm -rf flowType.buildbin-libdir && mkdir flowType.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowType_2.2.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowType.buildbin-libdir
StartedAt: 2014-04-05 05:22:53 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:23:22 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 28.6 seconds
RetCode: 0
Status:  OK 
PackageFile: flowType_2.2.1.tgz
PackageFileSize: 1.105 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowType.buildbin-libdir flowType_2.2.1.tar.gz'
>>>>>>> 

* installing *source* package ‘flowType’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -IboostIncl -fPIC  -mtune=core2 -g -O2 -Wall  -c countsAndMeans.cpp -o countsAndMeans.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -IboostIncl -fPIC  -mtune=core2 -g -O2 -Wall  -c flowType.cpp -o flowType.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -IboostIncl -fPIC  -mtune=core2 -g -O2 -Wall  -c numberGenerator.cpp -o numberGenerator.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o flowType.so countsAndMeans.o flowType.o numberGenerator.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/flowType.buildbin-libdir/flowType/libs
** R
** data
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init
Warning: replacing previous import by ‘flowClust::Map’ when loading ‘flowMerge’
Warning: replacing previous import by ‘flowCore::normalize’ when loading ‘flowMerge’
Warning: replacing previous import by ‘flowCore::sort’ when loading ‘flowMerge’
Creating a generic function for ‘summary’ from package ‘base’ in package ‘flowType’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init
Warning: replacing previous import by ‘flowClust::Map’ when loading ‘flowMerge’
Warning: replacing previous import by ‘flowCore::normalize’ when loading ‘flowMerge’
Warning: replacing previous import by ‘flowCore::sort’ when loading ‘flowMerge’
* DONE (flowType)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowType.buildbin-libdir/flowType/libs//flowType.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "flowType.buildbin-libdir/flowType/libs//flowType.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "flowType.buildbin-libdir/flowType/libs//flowType.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "flowType.buildbin-libdir/flowType/libs//flowType.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "flowType.buildbin-libdir/flowType/libs//flowType.so"