BioC 2.13: BUILD report for VariantTools on zin1

* checking for file ‘VariantTools/DESCRIPTION’ ... OK
* preparing ‘VariantTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:stats’:

    xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, as.vector, cbind, colnames, duplicated,
    eval, evalq, get, intersect, is.unsorted, lapply, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rep.int, rownames, sapply, setdiff, sort,
    table, tapply, union, unique, unlist

Loading required package: GenomicRanges
Loading required package: XVector
Loading required package: VariantAnnotation
Loading required package: Rsamtools
Loading required package: Biostrings

Attaching package: ‘VariantAnnotation’

The following object is masked from ‘package:base’:

    tabulate

Loading required package: GenomicFeatures
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    ‘browseVignettes()’. To cite Bioconductor, see
    ‘citation("Biobase")’, and for packages
    ‘citation("pkgname")’.

Loading required package: DBI


Error: processing vignette ‘VariantTools.Rnw’ failed with diagnostics:
 chunk 2 (label = callVariants) 
Error in LastError$store(results = results, is.error = is.error, throw.error = TRUE) : 
  Errors occurred during execution. First error message:
Error in value %in% seqlevels(x): error in evaluating the argument ‘table’ in selecting a method for function ‘%in%’: Error in seqlevels(x) : 
  error in evaluating the argument ‘x’ in selecting a method for function ‘seqlevels’: Error in mergeNamedAtomicVectors(seqlengths(x), seqlengths(y), what = c("sequence",  : 
  sequence TP53 has incompatible seqlengths:
  - in ‘x’: 2025767
  - in ‘y’: 2025772
Calls: merge ... .Seqinfo.merge -> .Seqinfo.mergexy -> mergeNamedAtomicVectors


For more information, use bplasterror().
To resume calculation, re-call the function and set the argument ‘resume’ to TRUE or wrap
the previous call in bpresume().

First traceback:
42: tools::buildVignettes(dir = ".", tangle = TRUE)
41: tryCatch({
        engine$we
Execution halted
BioC 2.13: BUILD report for VariantTools on zin1

Summary

Command output
