Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N [O] P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.13: CHECK report for OrganismDbi on moscato1

This page was generated on 2014-04-05 09:51:00 -0700 (Sat, 05 Apr 2014).

Package 501/750HostnameOS / ArchBUILDCHECKBUILD BIN
OrganismDbi 1.4.0
Biocore Data Team
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/OrganismDbi
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: OrganismDbi
Version: 1.4.0
Command: rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=OrganismDbi.buildbin-libdir OrganismDbi_1.4.0.tar.gz >OrganismDbi-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=OrganismDbi.buildbin-libdir --install="check:OrganismDbi-install.out" --force-multiarch --no-vignettes --timings OrganismDbi_1.4.0.tar.gz && mv OrganismDbi.buildbin-libdir/* OrganismDbi.Rcheck/ && rmdir OrganismDbi.buildbin-libdir
StartedAt: 2014-04-05 05:37:32 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:51:54 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 861.9 seconds
RetCode: 0
Status:  OK  
CheckDir: OrganismDbi.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/OrganismDbi.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OrganismDbi/DESCRIPTION' ... OK
* this is package 'OrganismDbi' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OrganismDbi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'AnnotationDbi'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  'AnnotationDbi:::.colsArgumentWarning' 'AnnotationDbi:::.resort'
  'AnnotationDbi:::dbConn' 'BiocGenerics:::testPackage'
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [34s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
rangeBasedAccessors 20.56   0.33   20.92
** running examples for arch 'x64' ... [33s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
rangeBasedAccessors 19.62   0.41   20.03
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'OrganismDbi_unit_tests.R' [259s]
 [259s] OK
** running tests for arch 'x64'
  Running 'OrganismDbi_unit_tests.R' [278s]
 [278s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/OrganismDbi.Rcheck/00check.log'
for details.

OrganismDbi.Rcheck/00install.out:


install for i386

* installing *source* package 'OrganismDbi' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'OrganismDbi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OrganismDbi' as OrganismDbi_1.4.0.zip
* DONE (OrganismDbi)

OrganismDbi.Rcheck/examples_i386/OrganismDbi-Ex.timings:

nameusersystemelapsed
OrganismDb1.480.092.12
makeOrganismPackage0.170.060.30
rangeBasedAccessors20.56 0.3320.92

OrganismDbi.Rcheck/examples_x64/OrganismDbi-Ex.timings:

nameusersystemelapsed
OrganismDb1.140.071.73
makeOrganismPackage0.120.010.18
rangeBasedAccessors19.62 0.4120.03