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BioC 2.13: BUILD BIN report for GeneNetworkBuilder on perceval

This page was generated on 2014-04-05 09:52:55 -0700 (Sat, 05 Apr 2014).

Package 286/750HostnameOS / ArchBUILDCHECKBUILD BIN
GeneNetworkBuilder 1.4.1
Jianhong Ou
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/GeneNetworkBuilder
Last Changed Rev: 86057 / Revision: 88450
Last Changed Date: 2014-02-04 10:03:14 -0800 (Tue, 04 Feb 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: GeneNetworkBuilder
Version: 1.4.1
Command: rm -rf GeneNetworkBuilder.buildbin-libdir && mkdir GeneNetworkBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneNetworkBuilder_1.4.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneNetworkBuilder.buildbin-libdir
StartedAt: 2014-04-05 05:24:11 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:24:24 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 13.5 seconds
RetCode: 0
Status:  OK 
PackageFile: GeneNetworkBuilder_1.4.1.tgz
PackageFileSize: 3.141 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneNetworkBuilder.buildbin-libdir GeneNetworkBuilder_1.4.1.tar.gz'
>>>>>>> 

* installing *source* package ‘GeneNetworkBuilder’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c geneTree.cpp -o geneTree.o
geneTree.cpp: In member function ‘void GTree::ChangeTolerance(node*)’:
geneTree.cpp:112: warning: comparison between signed and unsigned integer expressions
geneTree.cpp: In member function ‘std::vector<node*, std::allocator<node*> > GTree::Travel()’:
geneTree.cpp:207: warning: comparison between signed and unsigned integer expressions
geneTree.cpp: In member function ‘void GTree::verifyFilter(int)’:
geneTree.cpp:275: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c nodefilter.cpp -o nodefilter.o
nodefilter.cpp: In function ‘SEXPREC* filterNodes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’:
nodefilter.cpp:76: warning: comparison between signed and unsigned integer expressions
nodefilter.cpp:86: warning: comparison between signed and unsigned integer expressions
nodefilter.cpp:94: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o GeneNetworkBuilder.so geneTree.o nodefilter.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneNetworkBuilder)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GeneNetworkBuilder.buildbin-libdir/GeneNetworkBuilder/libs//GeneNetworkBuilder.so"