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BioC 2.12: CHECK report for rHVDM on george2

This page was generated on 2013-10-09 09:37:22 -0700 (Wed, 09 Oct 2013).

Package 547/671HostnameOS / ArchBUILDCHECKBUILD BIN
rHVDM 1.26.0
Martino Barenco
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/rHVDM
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: rHVDM
Version: 1.26.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings rHVDM_1.26.0.tar.gz
StartedAt: 2013-10-09 04:32:59 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 04:35:57 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 178.2 seconds
RetCode: 0
Status:  OK 
CheckDir: rHVDM.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/rHVDM.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rHVDM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rHVDM’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rHVDM’ can be installed ... [5s/5s] OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [96s/105s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
screening.nl 25.690  0.064  33.279
fitgene.nl   22.493  0.048  22.938
training.nl  21.761  0.028  22.276
estimerrors  13.849  0.220  14.362
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/rHVDM.Rcheck/00check.log’
for details.

rHVDM.Rcheck/00install.out:

* installing *source* package ‘rHVDM’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rHVDM)

rHVDM.Rcheck/rHVDM-Ex.timings:

nameusersystemelapsed
HVDMcheck0.8040.0280.836
HVDMreport1.6840.0281.742
estimerrors13.849 0.22014.362
fitgene1.7520.0201.772
fitgene.lin1.4640.0201.482
fitgene.nl22.493 0.04822.938
screening2.3560.0202.734
screening.nl25.690 0.06433.279
training1.4760.0121.497
training.nl21.761 0.02822.276