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BioC 2.12: BUILD BIN report for preprocessCore on moscato2

This page was generated on 2013-10-09 09:38:03 -0700 (Wed, 09 Oct 2013).

Package 498/671HostnameOS / ArchBUILDCHECKBUILD BIN
preprocessCore 1.22.0
Benjamin Milo Bolstad
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/preprocessCore
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: preprocessCore
Version: 1.22.0
Command: rm -rf preprocessCore.buildbin-libdir && mkdir preprocessCore.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=preprocessCore.buildbin-libdir preprocessCore_1.22.0.tar.gz
StartedAt: 2013-10-09 05:21:13 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 05:21:50 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 37.2 seconds
RetCode: 0
Status:  OK  
PackageFile: preprocessCore_1.22.0.zip
PackageFileSize: 199.3 KiB

Command output


install for i386

* installing *source* package 'preprocessCore' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_colSummarize.c -o R_colSummarize.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_plmd_interfaces.c -o R_plmd_interfaces.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_plmr_interfaces.c -o R_plmr_interfaces.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_rlm_interfaces.c -o R_rlm_interfaces.o
R_rlm_interfaces.c: In function 'R_rlm_rma_default_model':
R_rlm_interfaces.c:80:10: warning: unused variable 'scale' [-Wunused-variable]
R_rlm_interfaces.c: In function 'R_wrlm_rma_default_model':
R_rlm_interfaces.c:190:10: warning: unused variable 'scale' [-Wunused-variable]
R_rlm_interfaces.c: In function 'R_medianpolish_rma_default_model':
R_rlm_interfaces.c:307:11: warning: unused variable 'se' [-Wunused-variable]
R_rlm_interfaces.c:306:11: warning: unused variable 'weights' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_subColSummarize.c -o R_subColSummarize.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_subrcModel_interfaces.c -o R_subrcModel_interfaces.o
R_subrcModel_interfaces.c: In function 'R_sub_rcModelSummarize_medianpolish':
R_subrcModel_interfaces.c:189:11: warning: unused variable 'se' [-Wunused-variable]
R_subrcModel_interfaces.c:188:11: warning: unused variable 'weights' [-Wunused-variable]
R_subrcModel_interfaces.c:153:30: warning: unused variable 'buffer2' [-Wunused-variable]
R_subrcModel_interfaces.c:153:21: warning: unused variable 'buffer' [-Wunused-variable]
R_subrcModel_interfaces.c:153:11: warning: unused variable 'results' [-Wunused-variable]
R_subrcModel_interfaces.c: In function 'R_sub_rcModelSummarize_plm':
R_subrcModel_interfaces.c:508:10: warning: unused variable 'scale' [-Wunused-variable]
R_subrcModel_interfaces.c:467:30: warning: unused variable 'buffer2' [-Wunused-variable]
R_subrcModel_interfaces.c:467:21: warning: unused variable 'buffer' [-Wunused-variable]
R_subrcModel_interfaces.c:467:11: warning: unused variable 'results' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c avg.c -o avg.o
avg.c: In function 'colaverage_no_copy':
avg.c:90:7: warning: unused variable 'i' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c avg_log.c -o avg_log.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c biweight.c -o biweight.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init_package.c -o init_package.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c lm.c -o lm.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c log_avg.c -o log_avg.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c log_median.c -o log_median.o
log_median.c: In function 'logmedian_no_copy':
log_median.c:138:7: warning: unused variable 'i' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c matrix_functions.c -o matrix_functions.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c median.c -o median.o
median.c: In function 'colmedian_no_copy':
median.c:146:7: warning: unused variable 'i' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c median_log.c -o median_log.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c medianpolish.c -o medianpolish.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c plmd.c -o plmd.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c plmr.c -o plmr.o
plmr.c:82:13: warning: 'XTWY_R' defined but not used [-Wunused-function]
plmr.c:152:13: warning: 'XTWX_R' defined but not used [-Wunused-function]
plmr.c:279:13: warning: 'XTWX_R_inv' defined but not used [-Wunused-function]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c psi_fns.c -o psi_fns.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c qnorm.c -o qnorm.o
qnorm.c: In function 'qnorm_c_determine_target':
qnorm.c:1824:7: warning: unused variable 'non_na' [-Wunused-variable]
qnorm.c:1819:9: warning: unused variable 'j' [-Wunused-variable]
qnorm.c: In function 'qnorm_c_determine_target_via_subset':
qnorm.c:2411:7: warning: unused variable 'non_na' [-Wunused-variable]
qnorm.c:2406:9: warning: unused variable 'j' [-Wunused-variable]
qnorm.c: In function 'using_target_via_subset_part1':
qnorm.c:2618:11: warning: variable 'ind' set but not used [-Wunused-but-set-variable]
qnorm.c: In function 'using_target_via_subset_part2':
qnorm.c:2717:11: warning: unused variable 'datvec' [-Wunused-variable]
qnorm.c:2716:11: warning: unused variable 'sample_percentiles' [-Wunused-variable]
qnorm.c: In function 'using_target_via_subset':
qnorm.c:2866:11: warning: unused variable 'datvec' [-Wunused-variable]
qnorm.c:2865:11: warning: unused variable 'sample_percentiles' [-Wunused-variable]
qnorm.c:2861:7: warning: unused variable 'non_na' [-Wunused-variable]
qnorm.c:2860:7: warning: unused variable 'targetnon_na' [-Wunused-variable]
qnorm.c:2858:28: warning: unused variable 'target_ind_double_floor' [-Wunused-variable]
qnorm.c:2858:10: warning: unused variable 'target_ind_double' [-Wunused-variable]
qnorm.c:2857:10: warning: unused variable 'samplepercentile' [-Wunused-variable]
qnorm.c:2856:11: warning: unused variable 'ranks' [-Wunused-variable]
qnorm.c:2854:11: warning: unused variable 'row_mean' [-Wunused-variable]
qnorm.c:2852:14: warning: unused variable 'dimat' [-Wunused-variable]
qnorm.c:2850:15: warning: unused variable 'target_ind' [-Wunused-variable]
qnorm.c:2850:11: warning: unused variable 'ind' [-Wunused-variable]
qnorm.c:2850:9: warning: unused variable 'j' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rlm.c -o rlm.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rlm_anova.c -o rlm_anova.o
rlm_anova.c: In function 'rlm_fit_anova_given_probe_effects_engine':
rlm_anova.c:1235:10: warning: unused variable 'endprobe' [-Wunused-variable]
rlm_anova.c: In function 'rlm_compute_se_anova_given_probe_effects':
rlm_anova.c:1426:19: warning: unused variable 'varderivpsi' [-Wunused-variable]
rlm_anova.c:1426:17: warning: unused variable 'm' [-Wunused-variable]
rlm_anova.c:1426:10: warning: unused variable 'vs' [-Wunused-variable]
rlm_anova.c:1419:10: warning: unused variable 'scale' [-Wunused-variable]
rlm_anova.c:1418:10: warning: unused variable 'Kappa' [-Wunused-variable]
rlm_anova.c:1417:10: warning: unused variable 'sumderivpsi' [-Wunused-variable]
rlm_anova.c:1415:10: warning: unused variable 'sumpsi2' [-Wunused-variable]
rlm_anova.c:1414:10: warning: unused variable 'k1' [-Wunused-variable]
rlm_anova.c: In function 'rlm_wfit_anova_given_probe_effects_engine':
rlm_anova.c:1505:10: warning: unused variable 'endprobe' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rlm_se.c -o rlm_se.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rma_background4.c -o rma_background4.o
rma_background4.c: In function 'R_rma_bg_correct':
rma_background4.c:464:7: warning: unused variable 'j' [-Wunused-variable]
rma_background4.c:463:13: warning: 'PMcopy' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c weightedkerneldensity.c -o weightedkerneldensity.o
weightedkerneldensity.c: In function 'IQR':
weightedkerneldensity.c:746:14: warning: variable 'high_i' set but not used [-Wunused-but-set-variable]
weightedkerneldensity.c:746:7: warning: variable 'low_i' set but not used [-Wunused-but-set-variable]
weightedkerneldensity.c: In function 'bandwidth':
weightedkerneldensity.c:551:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc -m32 -shared -s -static-libgcc -o preprocessCore.dll tmp.def R_colSummarize.o R_plmd_interfaces.o R_plmr_interfaces.o R_rlm_interfaces.o R_subColSummarize.o R_subrcModel_interfaces.o avg.o avg_log.o biweight.o init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o median_log.o medianpolish.o plmd.o plmr.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_background4.o rma_common.o weightedkerneldensity.o -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lRlapack -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/preprocessCore.buildbin-libdir/preprocessCore/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'preprocessCore' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_colSummarize.c -o R_colSummarize.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_plmd_interfaces.c -o R_plmd_interfaces.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_plmr_interfaces.c -o R_plmr_interfaces.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_rlm_interfaces.c -o R_rlm_interfaces.o
R_rlm_interfaces.c: In function 'R_rlm_rma_default_model':
R_rlm_interfaces.c:80:10: warning: unused variable 'scale' [-Wunused-variable]
R_rlm_interfaces.c: In function 'R_wrlm_rma_default_model':
R_rlm_interfaces.c:190:10: warning: unused variable 'scale' [-Wunused-variable]
R_rlm_interfaces.c: In function 'R_medianpolish_rma_default_model':
R_rlm_interfaces.c:307:11: warning: unused variable 'se' [-Wunused-variable]
R_rlm_interfaces.c:306:11: warning: unused variable 'weights' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_subColSummarize.c -o R_subColSummarize.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_subrcModel_interfaces.c -o R_subrcModel_interfaces.o
R_subrcModel_interfaces.c: In function 'R_sub_rcModelSummarize_medianpolish':
R_subrcModel_interfaces.c:189:11: warning: unused variable 'se' [-Wunused-variable]
R_subrcModel_interfaces.c:188:11: warning: unused variable 'weights' [-Wunused-variable]
R_subrcModel_interfaces.c:153:30: warning: unused variable 'buffer2' [-Wunused-variable]
R_subrcModel_interfaces.c:153:21: warning: unused variable 'buffer' [-Wunused-variable]
R_subrcModel_interfaces.c:153:11: warning: unused variable 'results' [-Wunused-variable]
R_subrcModel_interfaces.c: In function 'R_sub_rcModelSummarize_plm':
R_subrcModel_interfaces.c:508:10: warning: unused variable 'scale' [-Wunused-variable]
R_subrcModel_interfaces.c:467:30: warning: unused variable 'buffer2' [-Wunused-variable]
R_subrcModel_interfaces.c:467:21: warning: unused variable 'buffer' [-Wunused-variable]
R_subrcModel_interfaces.c:467:11: warning: unused variable 'results' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c avg.c -o avg.o
avg.c: In function 'colaverage_no_copy':
avg.c:90:7: warning: unused variable 'i' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c avg_log.c -o avg_log.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c biweight.c -o biweight.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init_package.c -o init_package.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c lm.c -o lm.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c log_avg.c -o log_avg.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c log_median.c -o log_median.o
log_median.c: In function 'logmedian_no_copy':
log_median.c:138:7: warning: unused variable 'i' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c matrix_functions.c -o matrix_functions.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c median.c -o median.o
median.c: In function 'colmedian_no_copy':
median.c:146:7: warning: unused variable 'i' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c median_log.c -o median_log.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c medianpolish.c -o medianpolish.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c plmd.c -o plmd.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c plmr.c -o plmr.o
plmr.c:82:13: warning: 'XTWY_R' defined but not used [-Wunused-function]
plmr.c:152:13: warning: 'XTWX_R' defined but not used [-Wunused-function]
plmr.c:279:13: warning: 'XTWX_R_inv' defined but not used [-Wunused-function]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c psi_fns.c -o psi_fns.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c qnorm.c -o qnorm.o
qnorm.c: In function 'qnorm_c_determine_target':
qnorm.c:1824:7: warning: unused variable 'non_na' [-Wunused-variable]
qnorm.c:1819:9: warning: unused variable 'j' [-Wunused-variable]
qnorm.c: In function 'qnorm_c_determine_target_via_subset':
qnorm.c:2411:7: warning: unused variable 'non_na' [-Wunused-variable]
qnorm.c:2406:9: warning: unused variable 'j' [-Wunused-variable]
qnorm.c: In function 'using_target_via_subset_part1':
qnorm.c:2618:11: warning: variable 'ind' set but not used [-Wunused-but-set-variable]
qnorm.c: In function 'using_target_via_subset_part2':
qnorm.c:2717:11: warning: unused variable 'datvec' [-Wunused-variable]
qnorm.c:2716:11: warning: unused variable 'sample_percentiles' [-Wunused-variable]
qnorm.c: In function 'using_target_via_subset':
qnorm.c:2866:11: warning: unused variable 'datvec' [-Wunused-variable]
qnorm.c:2865:11: warning: unused variable 'sample_percentiles' [-Wunused-variable]
qnorm.c:2861:7: warning: unused variable 'non_na' [-Wunused-variable]
qnorm.c:2860:7: warning: unused variable 'targetnon_na' [-Wunused-variable]
qnorm.c:2858:28: warning: unused variable 'target_ind_double_floor' [-Wunused-variable]
qnorm.c:2858:10: warning: unused variable 'target_ind_double' [-Wunused-variable]
qnorm.c:2857:10: warning: unused variable 'samplepercentile' [-Wunused-variable]
qnorm.c:2856:11: warning: unused variable 'ranks' [-Wunused-variable]
qnorm.c:2854:11: warning: unused variable 'row_mean' [-Wunused-variable]
qnorm.c:2852:14: warning: unused variable 'dimat' [-Wunused-variable]
qnorm.c:2850:15: warning: unused variable 'target_ind' [-Wunused-variable]
qnorm.c:2850:11: warning: unused variable 'ind' [-Wunused-variable]
qnorm.c:2850:9: warning: unused variable 'j' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rlm.c -o rlm.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rlm_anova.c -o rlm_anova.o
rlm_anova.c: In function 'rlm_fit_anova_given_probe_effects_engine':
rlm_anova.c:1235:10: warning: unused variable 'endprobe' [-Wunused-variable]
rlm_anova.c: In function 'rlm_compute_se_anova_given_probe_effects':
rlm_anova.c:1426:19: warning: unused variable 'varderivpsi' [-Wunused-variable]
rlm_anova.c:1426:17: warning: unused variable 'm' [-Wunused-variable]
rlm_anova.c:1426:10: warning: unused variable 'vs' [-Wunused-variable]
rlm_anova.c:1419:10: warning: unused variable 'scale' [-Wunused-variable]
rlm_anova.c:1418:10: warning: unused variable 'Kappa' [-Wunused-variable]
rlm_anova.c:1417:10: warning: unused variable 'sumderivpsi' [-Wunused-variable]
rlm_anova.c:1415:10: warning: unused variable 'sumpsi2' [-Wunused-variable]
rlm_anova.c:1414:10: warning: unused variable 'k1' [-Wunused-variable]
rlm_anova.c: In function 'rlm_wfit_anova_given_probe_effects_engine':
rlm_anova.c:1505:10: warning: unused variable 'endprobe' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rlm_se.c -o rlm_se.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rma_background4.c -o rma_background4.o
rma_background4.c: In function 'R_rma_bg_correct':
rma_background4.c:464:7: warning: unused variable 'j' [-Wunused-variable]
rma_background4.c:463:13: warning: 'PMcopy' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c weightedkerneldensity.c -o weightedkerneldensity.o
weightedkerneldensity.c: In function 'IQR':
weightedkerneldensity.c:746:14: warning: variable 'high_i' set but not used [-Wunused-but-set-variable]
weightedkerneldensity.c:746:7: warning: variable 'low_i' set but not used [-Wunused-but-set-variable]
weightedkerneldensity.c: In function 'bandwidth':
weightedkerneldensity.c:551:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc -m64 -shared -s -static-libgcc -o preprocessCore.dll tmp.def R_colSummarize.o R_plmd_interfaces.o R_plmr_interfaces.o R_rlm_interfaces.o R_subColSummarize.o R_subrcModel_interfaces.o avg.o avg_log.o biweight.o init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o median_log.o medianpolish.o plmd.o plmr.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_background4.o rma_common.o weightedkerneldensity.o -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lRlapack -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/preprocessCore.buildbin-libdir/preprocessCore/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'preprocessCore' as preprocessCore_1.22.0.zip
* DONE (preprocessCore)