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BioC 2.12: CHECK report for piano on petty

This page was generated on 2013-10-09 09:40:22 -0700 (Wed, 09 Oct 2013).

Package 481/671HostnameOS / ArchBUILDCHECKBUILD BIN
piano 1.0.7
Leif Varemo
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/piano
Last Changed Rev: 79711 / Revision: 81334
Last Changed Date: 2013-08-22 00:25:34 -0700 (Thu, 22 Aug 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: piano
Version: 1.0.7
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch piano_1.0.7.tar.gz
StartedAt: 2013-10-08 23:26:06 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 23:28:55 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 169.6 seconds
RetCode: 0
Status:  OK 
CheckDir: piano.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/piano.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'piano/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'piano' version '1.0.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'piano' can be installed ... [8s/9s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [62s/63s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
networkPlot     10.543  0.178  10.846
GSAsummaryTable  9.935  0.145  10.238
runGSA           9.602  0.215   9.884
geneSetSummary   9.489  0.313   9.884
diffExp          9.035  0.340   9.655
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

piano.Rcheck/00install.out:

* installing *source* package 'piano' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (piano)

piano.Rcheck/piano-Ex.timings:

nameusersystemelapsed
GSAsummaryTable 9.935 0.14510.238
consensusHeatmap0.5460.0290.580
consensusScores0.1920.0090.206
diffExp9.0350.3409.655
extractFactors0.9640.0361.012
geneSetSummary9.4890.3139.884
loadGSC0.0500.0050.055
loadMAdata0.9520.0330.988
networkPlot10.543 0.17810.846
polarPlot2.2980.1212.444
runGSA9.6020.2159.884
runQC2.7190.1092.846