BioC 2.12: CHECK report for ontoCAT on moscato2

Package: ontoCAT

Version: 1.12.0

Command: rm -rf ontoCAT.buildbin-libdir && mkdir ontoCAT.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ontoCAT.buildbin-libdir ontoCAT_1.12.0.tar.gz >ontoCAT-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=ontoCAT.buildbin-libdir --install="check:ontoCAT-install.out" --force-multiarch --no-vignettes --timings ontoCAT_1.12.0.tar.gz && mv ontoCAT.buildbin-libdir/* ontoCAT.Rcheck/ && rmdir ontoCAT.buildbin-libdir

StartedAt: 2013-10-09 03:22:06 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 03:38:44 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 997.7 seconds

RetCode: 0

Status:  OK

CheckDir: ontoCAT.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/ontoCAT.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ontoCAT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ontoCAT' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ontoCAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [557s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
getTermRelations     292.58   0.04  292.47
getTermRelationNames 187.98   0.03  189.18
Ontology-class        29.89   0.19   34.89
getEFO                 9.09   0.04    9.16
getAllTermChildren     5.15   0.05    5.21
** running examples for arch 'x64' ... [377s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
getTermRelations     204.75   0.05  191.85
getTermRelationNames 140.60   0.18  123.26
Ontology-class        70.82   0.89   34.46
getEFO                 8.06   0.03    7.82
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/ontoCAT.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'ontoCAT' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ontoCAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ontoCAT' as ontoCAT_1.12.0.zip
* DONE (ontoCAT)