BioC 2.12: CHECK report for eisa on moscato2

Package: eisa

Version: 1.12.2

Command: rm -rf eisa.buildbin-libdir && mkdir eisa.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=eisa.buildbin-libdir eisa_1.12.2.tar.gz >eisa-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=eisa.buildbin-libdir --install="check:eisa-install.out" --force-multiarch --no-vignettes --timings eisa_1.12.2.tar.gz && mv eisa.buildbin-libdir/* eisa.Rcheck/ && rmdir eisa.buildbin-libdir

StartedAt: 2013-10-09 01:58:15 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 02:08:09 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 594.4 seconds

RetCode: 0

Status: OK

CheckDir: eisa.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/eisa.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'eisa/DESCRIPTION' ... OK
* this is package 'eisa' version '1.12.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'eisa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [180s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
ISA                    32.23   0.41   32.63
ISA.html               25.63   1.73   27.71
ISA.sweep              15.29   0.28   15.58
ISA.GO                 10.82   0.70   11.51
gograph                 9.43   0.75   10.20
ISA.iterate             9.31   0.19    9.51
ListHyperGResult-class  7.47   0.52    7.98
ListHyperGParams-class  7.56   0.15    8.47
ISA.unique              7.49   0.15    7.65
ISAExpressionSet        5.57   0.30    5.86
ISA.normalize           5.43   0.24    5.67
** running examples for arch 'x64' ... [169s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
ISA                    27.68   0.42   28.10
ISA.html               23.24   1.81   26.52
ISA.sweep              13.17   0.27   13.43
ISA.GO                 10.89   0.81   11.70
gograph                 8.69   0.72    9.48
ListHyperGResult-class  8.50   0.50    9.05
ISA.iterate             8.18   0.21    8.37
ListHyperGParams-class  7.79   0.17    7.95
ISA.unique              7.31   0.25    7.55
ISAExpressionSet        6.11   0.14    6.25
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK


install for i386

* installing *source* package 'eisa' ...
** R
** data
** inst
** preparing package for lazy loading
in method for 'coerce' with signature '"Biclust","ISAModules"': no definition for class "Biclust"
in method for 'coerce' with signature '"ISAModules","Biclust"': no definition for class "Biclust"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'eisa' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'eisa' as eisa_1.12.2.zip
* DONE (eisa)

BioC 2.12: CHECK report for eisa on moscato2

Summary

Command output