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BioC 2.12: BUILD BIN report for VegaMC on moscato2

This page was generated on 2013-10-09 09:39:06 -0700 (Wed, 09 Oct 2013).

Package 657/671HostnameOS / ArchBUILDCHECKBUILD BIN
VegaMC 2.7.0
Sandro Morganella
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/VegaMC
Last Changed Rev: 77557 / Revision: 81334
Last Changed Date: 2013-06-14 05:52:24 -0700 (Fri, 14 Jun 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: VegaMC
Version: 2.7.0
Command: rm -rf VegaMC.buildbin-libdir && mkdir VegaMC.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=VegaMC.buildbin-libdir VegaMC_2.7.0.tar.gz
StartedAt: 2013-10-09 05:33:41 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 05:34:21 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 39.5 seconds
RetCode: 0
Status:  OK  
PackageFile: VegaMC_2.7.0.zip
PackageFileSize: 1.741 MiB

Command output


install for i386

* installing *source* package 'VegaMC' ...
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function 'read_params':
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
run_vegaMC.c: In function 'call_VegaMC':
run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:461:29: warning: 'first_seg' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c: In function 'load_data':
run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:535:30: warning: 'position' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c sort_data.c -o sort_data.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c vegaMC.c -o vegaMC.o
vegaMC.c: In function 'heap_delete':
vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
vegaMC.c: In function 'init_trivial_segmentation':
vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable]
gcc -m32 -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/VegaMC.buildbin-libdir/VegaMC/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'VegaMC' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function 'read_params':
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
run_vegaMC.c: In function 'load_data':
run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:535:30: warning: 'position' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c: In function 'call_VegaMC':
run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:461:29: warning: 'first_seg' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c sort_data.c -o sort_data.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c vegaMC.c -o vegaMC.o
vegaMC.c: In function 'heap_delete':
vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
vegaMC.c: In function 'init_trivial_segmentation':
vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable]
gcc -m64 -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/VegaMC.buildbin-libdir/VegaMC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'VegaMC' as VegaMC_2.7.0.zip
* DONE (VegaMC)