BioC 2.12: CHECK report for SLGI on moscato2

Package: SLGI

Version: 1.20.0

Command: rm -rf SLGI.buildbin-libdir && mkdir SLGI.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SLGI.buildbin-libdir SLGI_1.20.0.tar.gz >SLGI-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=SLGI.buildbin-libdir --install="check:SLGI-install.out" --force-multiarch --no-vignettes --timings SLGI_1.20.0.tar.gz && mv SLGI.buildbin-libdir/* SLGI.Rcheck/ && rmdir SLGI.buildbin-libdir

StartedAt: 2013-10-09 04:14:22 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 04:24:17 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 595.0 seconds

RetCode: 0

Status: OK

CheckDir: SLGI.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/SLGI.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SLGI/DESCRIPTION' ... OK
* this is package 'SLGI' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SLGI' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 15.9Mb
  sub-directories of 1Mb or more:
    data      4.2Mb
    extdata  11.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [196s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
iSummary        35.44   0.48   35.93
siResult-class  28.39   1.06   29.46
plot            23.29   0.14   23.45
modelSLGI       23.26   0.06   23.32
compare         15.44   1.56   17.00
topInteraction  12.96   1.32   14.29
twoWayTable     12.27   0.06   12.32
normInteraction  8.47   0.42    8.89
AtongFnDomain    7.55   0.05    7.61
** running examples for arch 'x64' ... [154s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
iSummary        34.84   1.49   36.31
siResult-class  17.30   0.49   17.80
plot            16.49   0.53   17.02
compare         15.95   0.60   16.56
modelSLGI       13.29   0.39   13.68
twoWayTable     11.36   0.13   11.48
topInteraction   8.50   0.43    8.94
AtongFnDomain    6.43   0.08    6.50
normInteraction  5.44   0.48    5.95
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/SLGI.Rcheck/00check.log'
for details.


install for i386

* installing *source* package 'SLGI' ...
** R
** data
** inst
** preparing package for lazy loading
No methods found in "BiocGenerics" for requests: plot
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "BiocGenerics" for requests: plot

install for x64

* installing *source* package 'SLGI' ...
** testing if installed package can be loaded
No methods found in "BiocGenerics" for requests: plot
* MD5 sums
packaged installation of 'SLGI' as SLGI_1.20.0.zip
* DONE (SLGI)

BioC 2.12: CHECK report for SLGI on moscato2

Summary

Command output