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BioC 2.12: BUILD BIN report for Rtreemix on petty

This page was generated on 2013-10-09 09:39:38 -0700 (Wed, 09 Oct 2013).

Package 577/671HostnameOS / ArchBUILDCHECKBUILD BIN
Rtreemix 1.22.0
Jasmina Bogojeska
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/Rtreemix
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS [ OK ]

Summary

Package: Rtreemix
Version: 1.22.0
Command: rm -rf Rtreemix.buildbin-libdir && mkdir Rtreemix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Rtreemix_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Rtreemix.buildbin-libdir
StartedAt: 2013-10-09 01:04:36 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 01:05:30 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 53.9 seconds
RetCode: 0
Status:  OK 
PackageFile: Rtreemix_1.22.0.tgz
PackageFileSize: 1.063 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Rtreemix.buildbin-libdir Rtreemix_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package 'Rtreemix' ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c Rtreemix.cc -o Rtreemix.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c WrapGraph.cc -o WrapGraph.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c cfunctions.cc -o cfunctions.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c kmeans.cc -o kmeans.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c max_weight_branch.cc -o max_weight_branch.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c mtree.cc -o mtree.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c mtreemix.cc -o mtreemix.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c replaceleda.cc -o replaceleda.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o Rtreemix.so Rtreemix.o WrapGraph.o cfunctions.o kmeans.o max_weight_branch.o mtree.o mtreemix.o replaceleda.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/Rtreemix.buildbin-libdir/Rtreemix/libs
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'plot' when loading 'graphics'
Creating a generic function for 'print' from package 'base' in package 'Rtreemix'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'plot' when loading 'graphics'
* DONE (Rtreemix)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs//Rtreemix.so"