BioC 2.12: CHECK report for ReportingTools on george2

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/ReportingTools.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ReportingTools/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ReportingTools’ version ‘2.0.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ReportingTools’ can be installed ... [70s/74s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [28s/29s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘runTests.R’ [173s/194s]
 [173s/194s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘ReportingTools’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘objectToHTML’ with signature ‘object="trellis"’: no definition for class “trellis”
in method for ‘objectToHTML’ with signature ‘object="ggplot"’: no definition for class “ggplot”
in method for ‘publish’ with signature ‘object="trellis",publicationType="HTMLReport"’: no definition for class “trellis”
Note: no visible binding for '<<-' assignment to '.reportDirectory' 
Note: no visible binding for '<<-' assignment to '.reportDirectory' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ReportingTools)

name	user	system	elapsed
BaseReportType-class	0.964	0.008	0.976
CSVFile-class	0.016	0.000	0.013
CSVFile	0.028	0.004	0.029
DataPackage-class	0.040	0.004	0.044
DataPackage	0.024	0.000	0.024
HTMLReport	0.072	0.012	0.129
HTMLReportRef-class	0.016	0.000	0.017
Link	0.028	0.000	0.031
ReportHandlers-class	0.02	0.00	0.02
finish-methods	0.008	0.004	0.014
makeDESeqDF	0.020	0.000	0.023
mockRnaSeqData	0.040	0.000	0.039
publish-methods	0.064	0.000	0.064
reporting.theme	0.060	0.000	0.061
reporting.theme.alternate	1.020	0.008	1.026
validConnection	0.100	0.012	0.115

BioC 2.12: CHECK report for ReportingTools on george2

Summary

Command output