Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

BioC 2.12: CHECK report for RedeR on moscato2

This page was generated on 2013-10-09 09:38:59 -0700 (Wed, 09 Oct 2013).

Package 536/671HostnameOS / ArchBUILDCHECKBUILD BIN
RedeR 1.8.3
Mauro Castro
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/RedeR
Last Changed Rev: 79558 / Revision: 81334
Last Changed Date: 2013-08-19 09:56:23 -0700 (Mon, 19 Aug 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: RedeR
Version: 1.8.3
Command: rm -rf RedeR.buildbin-libdir && mkdir RedeR.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RedeR.buildbin-libdir RedeR_1.8.3.tar.gz >RedeR-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=RedeR.buildbin-libdir --install="check:RedeR-install.out" --force-multiarch --no-vignettes --timings RedeR_1.8.3.tar.gz && mv RedeR.buildbin-libdir/* RedeR.Rcheck/ && rmdir RedeR.buildbin-libdir
StartedAt: 2013-10-09 03:50:55 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 03:52:47 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 111.8 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: RedeR.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/RedeR.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RedeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RedeR' version '1.8.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RedeR' can be installed ... WARNING
Found the following significant warnings:
  Warning: package 'igraph' was built under R version 3.0.2
  Warning: package 'igraph' was built under R version 3.0.2
  Warning: package 'igraph' was built under R version 3.0.2
See 'E:/biocbld/bbs-2.12-bioc/meat/RedeR.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is  9.2Mb
  sub-directories of 1Mb or more:
    data   3.2Mb
    java   4.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENCE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [7s] OK
** running examples for arch 'x64' ... [6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.12-bioc/meat/RedeR.Rcheck/00check.log'
for details.

RedeR.Rcheck/00install.out:


install for i386

* installing *source* package 'RedeR' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: package 'igraph' was built under R version 3.0.2
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: package 'igraph' was built under R version 3.0.2

install for x64

* installing *source* package 'RedeR' ...
** testing if installed package can be loaded
Warning: package 'igraph' was built under R version 3.0.2
* MD5 sums
packaged installation of 'RedeR' as RedeR_1.8.3.zip
* DONE (RedeR)