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BioC 2.12: BUILD BIN report for RchyOptimyx on petty

This page was generated on 2013-10-09 09:40:09 -0700 (Wed, 09 Oct 2013).

Package 529/671HostnameOS / ArchBUILDCHECKBUILD BIN
RchyOptimyx 1.4.0
Adrin Jalali , Nima Aghaeepour
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/RchyOptimyx
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: RchyOptimyx
Version: 1.4.0
Command: rm -rf RchyOptimyx.buildbin-libdir && mkdir RchyOptimyx.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh RchyOptimyx_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R RchyOptimyx.buildbin-libdir
StartedAt: 2013-10-09 01:03:01 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 01:03:23 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 22.7 seconds
RetCode: 0
Status:  OK 
PackageFile: RchyOptimyx_1.4.0.tgz
PackageFileSize: 808 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=RchyOptimyx.buildbin-libdir RchyOptimyx_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package 'RchyOptimyx' ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c RchyOptimyx.cpp -o RchyOptimyx.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c dataRead.cpp -o dataRead.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c mystring.cpp -o mystring.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c numberGenerator.cpp -o numberGenerator.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o RchyOptimyx.so RchyOptimyx.o dataRead.o mystring.o numberGenerator.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/RchyOptimyx.buildbin-libdir/RchyOptimyx/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'RchyOptimyx'
Creating a new generic function for 'merge' in package 'RchyOptimyx'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RchyOptimyx)


>>>>>>> 
>>>>>>> FIXING LINKS FOR RchyOptimyx.buildbin-libdir/RchyOptimyx/libs//RchyOptimyx.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs//RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs//RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs//RchyOptimyx.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "RchyOptimyx.buildbin-libdir/RchyOptimyx/libs//RchyOptimyx.so"