BioC 2.12: CHECK report for RPA on moscato2

Package: RPA

Version: 1.16.0

Command: rm -rf RPA.buildbin-libdir && mkdir RPA.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RPA.buildbin-libdir RPA_1.16.0.tar.gz >RPA-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=RPA.buildbin-libdir --install="check:RPA-install.out" --force-multiarch --no-vignettes --timings RPA_1.16.0.tar.gz && mv RPA.buildbin-libdir/* RPA.Rcheck/ && rmdir RPA.buildbin-libdir

StartedAt: 2013-10-09 04:00:55 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 04:02:19 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 83.6 seconds

RetCode: 0

Status: OK

CheckDir: RPA.Rcheck

Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/RPA.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RPA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RPA' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RPA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'RPA/R/firstlib.R':
  .onLoad calls:
    packageStartupMessage("\nRPA Copyright (C) 2008-2013 Leo Lahti.\nThis program comes with ABSOLUTELY NO WARRANTY.\nThis is free software, and you are welcome to redistribute it under the FreeBSD open source license.\n")

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [3s] OK
** running examples for arch 'x64' ... [3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.12-bioc/meat/RPA.Rcheck/00check.log'
for details.


install for i386

* installing *source* package 'RPA' ...
** R
** inst
** preparing package for lazy loading
     Package    LibPath                              Item      
[1,] "affydata" "E:/biocbld/bbs-2.12-bioc/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"
in method for 'show' with signature '"rpa"': no definition for class "rpa"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
     Package    LibPath                              Item      
[1,] "affydata" "E:/biocbld/bbs-2.12-bioc/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"

install for x64

* installing *source* package 'RPA' ...
** testing if installed package can be loaded
     Package    LibPath                              Item      
[1,] "affydata" "E:/biocbld/bbs-2.12-bioc/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"
* MD5 sums
packaged installation of 'RPA' as RPA_1.16.0.zip
* DONE (RPA)

BioC 2.12: CHECK report for RPA on moscato2

Summary

Command output