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BioC 2.12: BUILD report for RCytoscape on george2

This page was generated on 2013-10-09 09:37:39 -0700 (Wed, 09 Oct 2013).

Package 530/671HostnameOS / ArchBUILDCHECKBUILD BIN
RCytoscape 1.10.0
Paul Shannon
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/RCytoscape
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64 [ ERROR ] skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  ERROR  skipped  skipped 

Summary

Package: RCytoscape
Version: 1.10.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RCytoscape
StartedAt: 2013-10-08 22:23:44 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 22:24:00 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 16.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file ‘RCytoscape/DESCRIPTION’ ... OK
* preparing ‘RCytoscape’:
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: XMLRPC
Warning in .simpleDuplicateClass(def, prev) :
  the specification for S3 class “AsIs” in package ‘XMLRPC’ seems equivalent to one from package ‘BiocGenerics’ and is not turning on duplicate class definitions for this class

Error: processing vignette ‘RCytoscape.Rnw’ failed with diagnostics:
 chunk 1 (label = g0) 
Error in function (type, msg, asError = TRUE)  : couldn't connect to host
Execution halted