PING 2.4.0 Renan Sauteraud
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/PING | Last Changed Rev: 78295 / Revision: 81334 | Last Changed Date: 2013-07-10 11:03:55 -0700 (Wed, 10 Jul 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
install for i386
* installing *source* package 'PING' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ping.c -o ping.o
ping.c: In function 'fitModelAllk':
ping.c:145:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c: In function 'iterEM':
ping.c:659:25: warning: unused variable 'mu' [-Wunused-variable]
ping.c: In function 'ECM1':
ping.c:912:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c:1072:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c:760:15: warning: unused variable 'k' [-Wunused-variable]
ping.c: In function 'ECM1PE':
ping.c:1320:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c:1473:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c:1108:15: warning: unused variable 'k' [-Wunused-variable]
ping.c: In function 'ECM2':
ping.c:1536:66: warning: unused variable 'ee' [-Wunused-variable]
ping.c:1536:57: warning: unused variable 'ggR' [-Wunused-variable]
ping.c:1536:52: warning: unused variable 'ggF' [-Wunused-variable]
ping.c:1536:47: warning: unused variable 'aaR' [-Wunused-variable]
ping.c:1536:42: warning: unused variable 'aaF' [-Wunused-variable]
ping.c:1536:29: warning: unused variable 'etaDiff' [-Wunused-variable]
ping.c:1536:9: warning: variable 'chiSum' set but not used [-Wunused-but-set-variable]
ping.c:1527:15: warning: unused variable 'k' [-Wunused-variable]
ping.c: In function 'ECM2PE':
ping.c:1743:66: warning: unused variable 'ee' [-Wunused-variable]
ping.c:1743:57: warning: unused variable 'ggR' [-Wunused-variable]
ping.c:1743:52: warning: unused variable 'ggF' [-Wunused-variable]
ping.c:1743:47: warning: unused variable 'aaR' [-Wunused-variable]
ping.c:1743:42: warning: unused variable 'aaF' [-Wunused-variable]
ping.c:1743:29: warning: unused variable 'etaDiff' [-Wunused-variable]
ping.c:1734:15: warning: unused variable 'k' [-Wunused-variable]
ping.c: In function 'getInfMat':
ping.c:2590:80: warning: unused variable 'PhiRw' [-Wunused-variable]
ping.c:2590:73: warning: unused variable 'PhiFw' [-Wunused-variable]
ping.c: In function 'getInfMatPE':
ping.c:3040:59: warning: unused variable 'PhiFRw' [-Wunused-variable]
ping.c: In function 'mergePeak':
ping.c:3312:20: warning: variable 'tstatMax' set but not used [-Wunused-but-set-variable]
ping.c:3301:11: warning: unused variable 'j' [-Wunused-variable]
ping.c:3301:7: warning: unused variable 'i' [-Wunused-variable]
ping.c: In function 'BIC':
ping.c:2101:6: warning: 'penalty' may be used uninitialized in this function [-Wuninitialized]
ping.c: In function 'BICPE':
ping.c:2208:6: warning: 'penalty' may be used uninitialized in this function [-Wuninitialized]
ping.c: In function 'fitModelK':
ping.c:477:18: warning: 'firstFit' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -shared -s -static-libgcc -o PING.dll tmp.def init.o ping.o -lws2_32 -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/PING.buildbin-libdir/PING/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'PING'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'PING' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ping.c -o ping.o
ping.c: In function 'fitModelAllk':
ping.c:145:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c: In function 'iterEM':
ping.c:659:25: warning: unused variable 'mu' [-Wunused-variable]
ping.c: In function 'ECM1':
ping.c:912:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c:1072:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c:760:15: warning: unused variable 'k' [-Wunused-variable]
ping.c: In function 'ECM1PE':
ping.c:1320:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c:1473:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
ping.c:1108:15: warning: unused variable 'k' [-Wunused-variable]
ping.c: In function 'ECM2':
ping.c:1536:66: warning: unused variable 'ee' [-Wunused-variable]
ping.c:1536:57: warning: unused variable 'ggR' [-Wunused-variable]
ping.c:1536:52: warning: unused variable 'ggF' [-Wunused-variable]
ping.c:1536:47: warning: unused variable 'aaR' [-Wunused-variable]
ping.c:1536:42: warning: unused variable 'aaF' [-Wunused-variable]
ping.c:1536:29: warning: unused variable 'etaDiff' [-Wunused-variable]
ping.c:1536:9: warning: variable 'chiSum' set but not used [-Wunused-but-set-variable]
ping.c:1527:15: warning: unused variable 'k' [-Wunused-variable]
ping.c: In function 'ECM2PE':
ping.c:1743:66: warning: unused variable 'ee' [-Wunused-variable]
ping.c:1743:57: warning: unused variable 'ggR' [-Wunused-variable]
ping.c:1743:52: warning: unused variable 'ggF' [-Wunused-variable]
ping.c:1743:47: warning: unused variable 'aaR' [-Wunused-variable]
ping.c:1743:42: warning: unused variable 'aaF' [-Wunused-variable]
ping.c:1743:29: warning: unused variable 'etaDiff' [-Wunused-variable]
ping.c:1734:15: warning: unused variable 'k' [-Wunused-variable]
ping.c: In function 'getInfMat':
ping.c:2590:80: warning: unused variable 'PhiRw' [-Wunused-variable]
ping.c:2590:73: warning: unused variable 'PhiFw' [-Wunused-variable]
ping.c: In function 'getInfMatPE':
ping.c:3040:59: warning: unused variable 'PhiFRw' [-Wunused-variable]
ping.c: In function 'mergePeak':
ping.c:3312:20: warning: variable 'tstatMax' set but not used [-Wunused-but-set-variable]
ping.c:3301:11: warning: unused variable 'j' [-Wunused-variable]
ping.c:3301:7: warning: unused variable 'i' [-Wunused-variable]
ping.c: In function 'BIC':
ping.c:2101:6: warning: 'penalty' may be used uninitialized in this function [-Wuninitialized]
ping.c: In function 'BICPE':
ping.c:2208:6: warning: 'penalty' may be used uninitialized in this function [-Wuninitialized]
ping.c: In function 'fitModelK':
ping.c:477:18: warning: 'firstFit' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o PING.dll tmp.def init.o ping.o -lws2_32 -LC:/GSL/x64/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/PING.buildbin-libdir/PING/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PING' as PING_2.4.0.zip
* DONE (PING)