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BioC 2.12: BUILD BIN report for PICS on petty

This page was generated on 2013-10-09 09:39:51 -0700 (Wed, 09 Oct 2013).

Package 483/671HostnameOS / ArchBUILDCHECKBUILD BIN
PICS 2.4.1
Renan Sauteraud
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/PICS
Last Changed Rev: 78350 / Revision: 81334
Last Changed Date: 2013-07-11 14:16:42 -0700 (Thu, 11 Jul 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: PICS
Version: 2.4.1
Command: rm -rf PICS.buildbin-libdir && mkdir PICS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PICS_2.4.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R PICS.buildbin-libdir
StartedAt: 2013-10-09 01:01:35 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 01:01:59 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 23.6 seconds
RetCode: 0
Status:  OK 
PackageFile: PICS_2.4.1.tgz
PackageFileSize: 1.153 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=PICS.buildbin-libdir PICS_2.4.1.tar.gz'
>>>>>>> 

* installing *source* package 'PICS' ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c pics.c -o pics.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c segment.c -o segment.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o PICS.so pics.o segment.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/PICS.buildbin-libdir/PICS/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PICS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR PICS.buildbin-libdir/PICS/libs//PICS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"