Package: gageData

Version: 1.1.5

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings gageData_1.1.5.tar.gz

StartedAt: 2013-03-24 12:24:25 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:25:21 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 56.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: gageData.Rcheck

Warnings: 1

* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/gageData.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gageData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gageData’ version ‘1.1.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘gageData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 11.8Mb
  sub-directories of 1Mb or more:
    data  11.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
              old_size new_size compress
  bmp6.rda       560Kb    492Kb       xz
  go.gs.rda      1.9Mb    611Kb       xz
  go.mm.rda      1.7Mb    549Kb       xz
  go.rn.rda      1.9Mb    659Kb       xz
  go.sc.rda      891Kb    289Kb       xz
  kegg.gs.rda     28Kb     20Kb       xz
  kegg.mm.rda     32Kb     21Kb       xz
  kegg.rn.rda     30Kb     21Kb       xz
  orf2eg.rda      33Kb     11Kb       xz
  sc.gene.rda     71Kb     28Kb       xz
* checking examples ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
gse16873.full 5.08  0.188   5.863
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/gageData.Rcheck/00check.log’
for details.

* installing *source* package ‘gageData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (gageData)

name	user	system	elapsed
bmp6	1.660	0.088	2.026
genesets	0.412	0.020	0.453
gse16873.full	5.080	0.188	5.863
sc.gene	0.016	0.004	0.021