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Package 609/609HostnameOS / ArchBUILDCHECKBUILD BIN
zlibbioc 1.4.0
Bioconductor Package Maintainer
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/zlibbioc
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: zlibbioc
Version: 1.4.0
Command: rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=zlibbioc.buildbin-libdir zlibbioc_1.4.0.tar.gz
StartedAt: 2013-03-25 04:28:09 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 04:28:33 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 24.0 seconds
RetCode: 0
Status:  OK  
PackageFile: zlibbioc_1.4.0.zip
PackageFileSize: 240.9 KiB

Command output


install for i386

* installing *source* package 'zlibbioc' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "D:/biocbld/bbs-2.11-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.11-bioc/tmpdir/Rtmpyw3khA/R.INSTALL16e84bc51aa/zlibbioc/src/zlib-1.2.5'
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
gcc -m32  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc
gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
Creating library file: libzbiocdll.a
strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.11-bioc/tmpdir/Rtmpyw3khA/R.INSTALL16e84bc51aa/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll .
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "D:/biocbld/bbs-2.11-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o
gcc -m32 -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'UsingZlibbioc.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'zlibbioc' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
mkdir -p "D:/biocbld/bbs-2.11-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.11-bioc/tmpdir/RtmpaiGK7h/R.INSTALLd605758366/zlibbioc/src/zlib-1.2.5'
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
gcc -m64  -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o 
windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc
gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a  \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o  zlibrc.o
Creating library file: libzbiocdll.a
strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.11-bioc/tmpdir/RtmpaiGK7h/R.INSTALLd605758366/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll .
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "D:/biocbld/bbs-2.11-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o
gcc -m64 -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zlibbioc' as zlibbioc_1.4.0.zip

* DONE (zlibbioc)