| Back to the "Multiple platform build/check report" | A B C D E F G H I J K L M N O P Q R S [T] U V W X Y Z |
| Package 576/609 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| ternarynet 1.2.0 Matthew N. McCall
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | OK | |||||
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | |||||
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
| Package: ternarynet |
| Version: 1.2.0 |
| Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ternarynet_1.2.0.tar.gz |
| StartedAt: 2013-03-25 01:29:46 -0700 (Mon, 25 Mar 2013) |
| EndedAt: 2013-03-25 01:31:31 -0700 (Mon, 25 Mar 2013) |
| EllapsedTime: 104.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ternarynet.Rcheck |
| Warnings: 0 |
* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/ternarynet.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ternarynet/DESCRIPTION' ... OK
* this is package 'ternarynet' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'ternarynet' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotFit 7.210 0.018 7.346
attractorSummary 7.200 0.013 7.266
plotPost 7.165 0.013 7.257
tnetpost 7.155 0.010 7.210
predictAttractor 7.149 0.013 7.241
plotTraces 7.117 0.012 7.190
tnetfit 7.104 0.013 7.153
ternaryFit-class 7.108 0.008 7.140
graphPosterior 7.094 0.014 7.268
ternaryPost-class 7.064 0.011 7.121
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
ternarynet.Rcheck/00install.out:
* installing *source* package 'ternarynet' ... ** libs *** arch - i386 g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c tnetfit.cc -o tnetfit.o tnetfit.cc: In function 'SEXPREC* tnetfit(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': tnetfit.cc:73: warning: unused variable 'tempi' tnetfit.cc:98: warning: 'muci_old' may be used uninitialized in this function tnetfit.cc:98: warning: 'sigmaci' may be used uninitialized in this function tnetfit.cc:98: warning: 'sigma0' may be used uninitialized in this function tnetfit.cc:77: warning: 'newScore' may be used uninitialized in this function g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c tnetfuncs.cc -o tnetfuncs.o tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)': tnetfuncs.cc:427: warning: unused variable 'tableWidth' tnetfuncs.cc:435: warning: unused variable 'ipause' tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)': tnetfuncs.cc:517: warning: unused variable 'ipause' tnetfuncs.cc:521: warning: unused variable 'i' g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c tnetpost.cc -o tnetpost.o tnetpost.cc: In function 'SEXPREC* tnetpost(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': tnetpost.cc:25: warning: unused variable 'ipause' tnetpost.cc:27: warning: unused variable 'm0fit' tnetpost.cc:28: warning: unused variable 'finalScore' tnetpost.cc:30: warning: unused variable 'l0' tnetpost.cc:30: warning: unused variable 'stage_count' tnetpost.cc:30: warning: unused variable 'tempi' tnetpost.cc:30: warning: unused variable 'jtrans' tnetpost.cc:30: warning: unused variable 'nTransition' g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ternarynet.so tnetfit.o tnetfuncs.o tnetpost.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-2.11-bioc/meat/ternarynet.Rcheck/ternarynet/libs/i386 ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'ternarynet.Rnw' ** testing if installed package can be loaded * DONE (ternarynet)
ternarynet.Rcheck/ternarynet-Ex.timings:
| name | user | system | elapsed | |
| attractorSummary | 7.200 | 0.013 | 7.266 | |
| graphPosterior | 7.094 | 0.014 | 7.268 | |
| plotFit | 7.210 | 0.018 | 7.346 | |
| plotPost | 7.165 | 0.013 | 7.257 | |
| plotTraces | 7.117 | 0.012 | 7.190 | |
| predictAttractor | 7.149 | 0.013 | 7.241 | |
| simulateSteadyState | 0.002 | 0.000 | 0.002 | |
| ternaryFit-class | 7.108 | 0.008 | 7.140 | |
| ternaryFitParameters-class | 0.003 | 0.000 | 0.002 | |
| ternaryPost-class | 7.064 | 0.011 | 7.121 | |
| tnetfit | 7.104 | 0.013 | 7.153 | |
| tnetpost | 7.155 | 0.010 | 7.210 | |