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Package 500/609HostnameOS / ArchBUILDCHECKBUILD BIN
rHVDM 1.24.0
Martino Barenco
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/rHVDM
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: rHVDM
Version: 1.24.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch rHVDM_1.24.0.tar.gz
StartedAt: 2013-03-25 01:05:16 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:07:53 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 157.1 seconds
RetCode: 0
Status:  OK 
CheckDir: rHVDM.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/rHVDM.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'rHVDM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rHVDM' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'rHVDM' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
screening.nl 23.824  0.384  24.660
fitgene.nl   21.392  0.330  22.107
training.nl  21.153  0.303  21.648
estimerrors   5.824  2.827  11.201
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/rHVDM.Rcheck/00check.log'
for details.

rHVDM.Rcheck/00install.out:

* installing *source* package 'rHVDM' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'rHVDM.Rnw' 
** testing if installed package can be loaded

* DONE (rHVDM)

rHVDM.Rcheck/rHVDM-Ex.timings:

nameusersystemelapsed
HVDMcheck0.5110.0470.993
HVDMreport1.5050.0802.909
estimerrors 5.824 2.82711.201
fitgene1.5260.0731.691
fitgene.lin1.5260.0761.663
fitgene.nl21.392 0.33022.107
screening2.3310.1192.550
screening.nl23.824 0.38424.660
training1.4650.0691.553
training.nl21.153 0.30321.648