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Package 465/609HostnameOS / ArchBUILDCHECKBUILD BIN
qpgraph 1.14.4
Robert Castelo
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/qpgraph
Last Changed Rev: 74015 / Revision: 74773
Last Changed Date: 2013-03-07 09:31:24 -0800 (Thu, 07 Mar 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: qpgraph
Version: 1.14.4
Command: rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qpgraph_1.14.4.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R qpgraph.buildbin-libdir
StartedAt: 2013-03-25 02:01:05 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:01:54 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 48.4 seconds
RetCode: 0
Status:  OK 
PackageFile: qpgraph_1.14.4.tgz
PackageFileSize: 2.391 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=qpgraph.buildbin-libdir qpgraph_1.14.4.tar.gz'
>>>>>>> 

* installing *source* package 'qpgraph' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin9.8.0
checking host system type... i686-apple-darwin9.8.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic  -c cliquer.c -o cliquer.o
cliquer.c: In function 'clique_print_time':
cliquer.c:1787: warning: unused variable 'fp'
cliquer.c: In function 'clique_print_time_always':
cliquer.c:1836: warning: unused variable 'fp'
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic  -c graph.c -o graph.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic  -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'stat_mis':
qpgraph.c:4107: warning: unused variable 'k'
qpgraph.c:4107: warning: unused variable 'j'
qpgraph.c:4107: warning: unused variable 'i'
qpgraph.c: In function 'lr_em':
qpgraph.c:4149: warning: unused variable 'Y_j'
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:7959: warning: assignment from incompatible pointer type
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic  -c reorder.c -o reorder.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRblas -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRlapack -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'qpTxRegNet.Rnw' 
** testing if installed package can be loaded

* DONE (qpgraph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=qpgraph.buildbin-libdir --libs-only qpgraph_1.14.4.tar.gz'
>>>>>>> 

* installing *source* package 'qpgraph' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin9.8.0
checking host system type... i686-apple-darwin9.8.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic  -c cliquer.c -o cliquer.o
cliquer.c: In function 'clique_print_time':
cliquer.c:1787: warning: unused variable 'fp'
cliquer.c: In function 'clique_print_time_always':
cliquer.c:1836: warning: unused variable 'fp'
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic  -c graph.c -o graph.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic  -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'stat_mis':
qpgraph.c:4107: warning: unused variable 'k'
qpgraph.c:4107: warning: unused variable 'j'
qpgraph.c:4107: warning: unused variable 'i'
qpgraph.c: In function 'lr_em':
qpgraph.c:4149: warning: unused variable 'Y_j'
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:7959: warning: assignment from incompatible pointer type
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic  -c reorder.c -o reorder.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRblas -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRlapack -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/x86_64

* DONE (qpgraph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so"