Package: plateCore

Version: 1.16.0

Command: rm -rf plateCore.buildbin-libdir && mkdir plateCore.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=plateCore.buildbin-libdir plateCore_1.16.0.tar.gz >plateCore-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=plateCore.buildbin-libdir --install="check:plateCore-install.out" --force-multiarch --no-vignettes --timings plateCore_1.16.0.tar.gz && mv plateCore.buildbin-libdir/* plateCore.Rcheck/ && rmdir plateCore.buildbin-libdir

StartedAt: 2013-03-25 02:33:40 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 02:38:30 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 290.5 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.11-bioc/meat/plateCore.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
panel.xyplot.flowPlate: warning in filterBoundary(filter =
  filter[[nm]], parameters = c(channel.x.name, channel.y.name), frame =
  frames[[nm]]): partial argument match of 'filter' to 'filter.object'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
mfiPlot-methods           11.62   0.00   11.62
applyControlGates-methods 10.33   0.00   10.33
summaryStats-methods      10.33   0.00   10.33
on-methods                 7.82   0.02    7.83
fpbind-methods             5.76   0.00    5.76
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
mfiPlot-methods           12.88   0.00   12.90
summaryStats-methods      11.48   0.02   11.50
applyControlGates-methods 10.22   0.00   10.22
on-methods                 7.94   0.02    7.96
fpbind-methods             6.18   0.00    6.18
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.11-bioc/meat/plateCore.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'plateCoreVig.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'plateCore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plateCore' as plateCore_1.16.0.zip

* DONE (plateCore)