netresponse 1.10.0
Leo Lahti
| Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/netresponse | | Last Changed Rev: 70050 / Revision: 74773 | | Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | [ WARNINGS ] | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/netresponse.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘netresponse/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘netresponse’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘netresponse’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... WARNING
Foreign function calls with ‘PACKAGE’ argument in a different package:
.Call("discEF", ..., PACKAGE = "infotheo")
.Call("discEW", ..., PACKAGE = "infotheo")
Undeclared package in foreign function calls:
‘infotheo’
See the chapter ‘System and foreign language interfaces’ of the
‘Writing R Extensions’ manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ICMg.combined.sampler 54.639 0.068 55.476
detect.responses 9.980 0.088 10.329
netresponse-package 6.017 0.048 6.403
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘ICMg.test.R’
Running ‘test.R’
Running ‘vdpmixture.R’
Running ‘visualization.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
See
‘/loc/home/biocbuild/bbs-2.11-bioc/meat/netresponse.Rcheck/00check.log’
for details.
* installing *source* package ‘netresponse’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.11-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c netresponse.c -o netresponse.o
netresponse.c: In function ‘mHPpost’:
netresponse.c:264:15: warning: unused variable ‘prior_fields’ [-Wunused-variable]
netresponse.c: In function ‘mLogLambda’:
netresponse.c:713:20: warning: ‘U_p’ may be used uninitialized in this function [-Wuninitialized]
netresponse.c:713:20: warning: ‘KsiBeta’ may be used uninitialized in this function [-Wuninitialized]
netresponse.c:713:20: warning: ‘KsiAlpha’ may be used uninitialized in this function [-Wuninitialized]
netresponse.c:713:20: warning: ‘BetaKsi’ may be used uninitialized in this function [-Wuninitialized]
netresponse.c:713:20: warning: ‘AlphaKsi’ may be used uninitialized in this function [-Wuninitialized]
netresponse.c:713:20: warning: ‘Mutilde’ may be used uninitialized in this function [-Wuninitialized]
netresponse.c:713:20: warning: ‘Mubar’ may be used uninitialized in this function [-Wuninitialized]
netresponse.c:713:20: warning: ‘S2mu’ may be used uninitialized in this function [-Wuninitialized]
netresponse.c:713:20: warning: ‘Mumu’ may be used uninitialized in this function [-Wuninitialized]
gcc -std=gnu99 -shared -L/usr/local/lib64 -o netresponse.so netresponse.o -L/home/biocbuild/bbs-2.11-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.11-bioc/meat/netresponse.Rcheck/netresponse/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
‘netresponse.Rnw’
** testing if installed package can be loaded
* DONE (netresponse)