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Package 42/609HostnameOS / ArchBUILDCHECKBUILD BIN
aroma.light 1.28.0
Henrik Bengtsson
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/aroma.light
Last Changed Rev: 70063 / Revision: 74773
Last Changed Date: 2012-10-01 20:39:49 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: aroma.light
Version: 1.28.0
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings aroma.light_1.28.0.tar.gz
StartedAt: 2013-03-24 23:18:40 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 23:20:00 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 79.7 seconds
RetCode: 0
Status:  OK 
CheckDir: aroma.light.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/aroma.light.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘aroma.light/DESCRIPTION’ ... OK
* this is package ‘aroma.light’ version ‘1.28.0’
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘aroma.light’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
normalizeAffine.matrix   18.025  0.028  18.691
normalizeCurveFit.matrix 17.637  0.028  17.909
* checking PDF version of manual ... OK

aroma.light.Rcheck/00install.out:

* installing *source* package ‘aroma.light’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (aroma.light)

aroma.light.Rcheck/aroma.light-Ex.timings:

nameusersystemelapsed
backtransformAffine.matrix0.0000.0040.004
backtransformPrincipalCurve.matrix0.6360.0120.659
calibrateMultiscan.matrix000
callNaiveGenotypes.numeric0.6480.0040.691
distanceBetweenLines0.0240.0000.024
findPeaksAndValleys.density0.1280.0000.126
fitPrincipalCurve.matrix0.4520.0080.496
fitXYCurve.matrix0.0720.0000.070
iwpca.matrix0.020.000.03
likelihood.smooth.spline0.1720.0040.219
medianPolish.matrix0.0040.0000.009
normalizeAffine.matrix18.025 0.02818.691
normalizeCurveFit.matrix17.637 0.02817.909
normalizeDifferencesToAverage.list0.2320.0080.240
normalizeFragmentLength0.9160.0120.941
normalizeQuantileRank.list0.2200.0040.226
normalizeQuantileRank.matrix0.0760.0000.077
normalizeQuantileSpline.matrix2.1640.0002.164
normalizeTumorBoost.numeric0.1680.0040.195
robustSmoothSpline0.0720.0040.097
sampleCorrelations.matrix0.5680.0000.570
sampleTuples0.0000.0000.001
wpca.matrix0.0200.0080.030