Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S [T] U  V  W  X  Y  Z 

Package 582/609HostnameOS / ArchBUILDCHECKBUILD BIN
TransView 1.0.7
Julius Muller
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/TransView
Last Changed Rev: 73106 / Revision: 74773
Last Changed Date: 2013-02-03 07:25:33 -0800 (Sun, 03 Feb 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: TransView
Version: 1.0.7
Command: rm -rf TransView.buildbin-libdir && mkdir TransView.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=TransView.buildbin-libdir TransView_1.0.7.tar.gz
StartedAt: 2013-03-25 04:26:43 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 04:27:38 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 55.4 seconds
RetCode: 0
Status:  OK  
PackageFile: TransView_1.0.7.zip
PackageFileSize: 1.657 MiB

Command output


install for i386

* installing *source* package 'TransView' ...
** libs
gcc -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_TransView.c -o R_init_TransView.o
gcc -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c construct_dc.c -o construct_dc.o
construct_dc.c: In function 'write_density':
construct_dc.c:236:20: warning: operation on 'cs.min_scorespace' may be undefined [-Wsequence-point]
gcc -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c parse_sam.c -o parse_sam.o
In file included from D:/biocbld/BBS-2˜1.11-/R/include/R.h:44:0,
                 from construct_dc.h:6,
                 from parse_sam.h:5,
                 from parse_sam.c:13:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RS.h:45:0: warning: "ERROR" redefined [enabled by default]
c:\rtools216\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/wingdi.h:70:0: note: this is the location of the previous definition
In file included from parse_sam.h:5:0,
                 from parse_sam.c:13:
construct_dc.h:13:0: warning: "max" redefined [enabled by default]
c:\rtools216\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/windef.h:149:0: note: this is the location of the previous definition
gcc -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c slice_dc.c -o slice_dc.o
gcc -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c visuals.c -o visuals.o
gcc -m32 -shared -s -static-libgcc -o TransView.dll tmp.def R_init_TransView.o construct_dc.o parse_sam.o slice_dc.o visuals.o D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/i386/libbam.a -lws2_32 -LD:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/TransView.buildbin-libdir/TransView/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'TransView.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'TransView' ...
** libs
gcc -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_TransView.c -o R_init_TransView.o
gcc -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c construct_dc.c -o construct_dc.o
construct_dc.c: In function 'write_density':
construct_dc.c:236:20: warning: operation on 'cs.min_scorespace' may be undefined [-Wsequence-point]
gcc -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c parse_sam.c -o parse_sam.o
In file included from D:/biocbld/BBS-2˜1.11-/R/include/R.h:44:0,
                 from construct_dc.h:6,
                 from parse_sam.h:5,
                 from parse_sam.c:13:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RS.h:45:0: warning: "ERROR" redefined [enabled by default]
c:\rtools216\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/wingdi.h:70:0: note: this is the location of the previous definition
In file included from parse_sam.h:5:0,
                 from parse_sam.c:13:
construct_dc.h:13:0: warning: "max" redefined [enabled by default]
c:\rtools216\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/windef.h:149:0: note: this is the location of the previous definition
gcc -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c slice_dc.c -o slice_dc.o
gcc -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c visuals.c -o visuals.o
gcc -m64 -shared -s -static-libgcc -o TransView.dll tmp.def R_init_TransView.o construct_dc.o parse_sam.o slice_dc.o visuals.o D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/x64/libbam.a -lws2_32 -LD:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/TransView.buildbin-libdir/TransView/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TransView' as TransView_1.0.7.zip

* DONE (TransView)