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Package 498/609HostnameOS / ArchBUILDCHECKBUILD BIN
Rgraphviz 2.2.1
Kasper Daniel Hansen
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/Rgraphviz
Last Changed Rev: 70403 / Revision: 74773
Last Changed Date: 2012-10-10 16:57:47 -0700 (Wed, 10 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: Rgraphviz
Version: 2.2.1
Command: rm -rf Rgraphviz.buildbin-libdir && mkdir Rgraphviz.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Rgraphviz.buildbin-libdir Rgraphviz_2.2.1.tar.gz >Rgraphviz-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=Rgraphviz.buildbin-libdir --install="check:Rgraphviz-install.out" --force-multiarch --no-vignettes --timings Rgraphviz_2.2.1.tar.gz && mv Rgraphviz.buildbin-libdir/* Rgraphviz.Rcheck/ && rmdir Rgraphviz.buildbin-libdir
StartedAt: 2013-03-25 02:52:20 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:54:37 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 137.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: Rgraphviz.Rcheck
Warnings: 2

Command output

* using log directory 'D:/biocbld/bbs-2.11-bioc/meat/Rgraphviz.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* this is package 'Rgraphviz' version '2.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'Rgraphviz' can be installed ... WARNING
Found the following significant warnings:
  D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
See 'D:/biocbld/bbs-2.11-bioc/meat/Rgraphviz.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... WARNING
Found the following file(s) with non-portable file names:
  src/graphviz/libltdl/m4/lt˜obsolete.m4
  src/graphviz/m4/lt˜obsolete.m4
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'D:/biocbld/bbs-2.11-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/i386/Rgraphviz.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
  Found 'putchar', possibly from 'putchar' (C)
  Found 'puts', possibly from 'printf' (C), 'puts' (C)
File 'D:/biocbld/bbs-2.11-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/x64/Rgraphviz.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
  Found 'putchar', possibly from 'putchar' (C)
  Found 'puts', possibly from 'printf' (C), 'puts' (C)

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.  The detected symbols
are linked into the code but might come from libraries and not actually
be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'runTests.R'
 OK
** running tests for arch 'x64'
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.11-bioc/meat/Rgraphviz.Rcheck/00check.log'
for details.

Rgraphviz.Rcheck/00install.out:


install for i386

* installing *source* package 'Rgraphviz' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c LL_funcs.c -o LL_funcs.o
In file included from common.h:7:0,
                 from LL_funcs.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:430:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c Rgraphviz.c -o Rgraphviz.o
In file included from common.h:7:0,
                 from Rgraphviz.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c RgraphvizInit.c -o RgraphvizInit.o
In file included from common.h:7:0,
                 from RgraphvizInit.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c agopen.c -o agopen.o
In file included from common.h:7:0,
                 from agopen.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c agread.c -o agread.o
In file included from common.h:7:0,
                 from agread.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c agwrite.c -o agwrite.o
In file included from common.h:7:0,
                 from agwrite.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c bezier.c -o bezier.o
In file included from common.h:7:0,
                 from bezier.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c buildEdgeList.c -o buildEdgeList.o
In file included from common.h:7:0,
                 from buildEdgeList.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c buildNodeList.c -o buildNodeList.o
In file included from common.h:7:0,
                 from buildNodeList.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c doLayout.c -o doLayout.o
In file included from common.h:7:0,
                 from doLayout.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c graphvizVersion.c -o graphvizVersion.o
In file included from common.h:7:0,
                 from graphvizVersion.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/i386/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
In file included from common.h:7:0,
                 from init.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m32 -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -WI,--enable-auto-import libwin/i386/lib/libxdot.a libwin/i386/lib/libgvplugin_dot_layout.a libwin/i386/lib/libgvplugin_neato_layout.a libwin/i386/lib/libgvplugin_core.a libwin/i386/lib/libgvc.a libwin/i386/lib/libpathplan.a libwin/i386/lib/libgraph.a libwin/i386/lib/libcdt.a -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/i386 -lR
sed "s!@GRAPHVIZ_VERSION@!"2.28.0"!" ../R/graphviz_build_version.R.in |\
  sed "s!@GRAPHVIZ_BUNDLED@!TRUE!" > ../R/graphviz_build_version.R
installing to D:/biocbld/bbs-2.11-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'head' from package 'utils' in package 'Rgraphviz'
Creating a generic function for 'tail' from package 'utils' in package 'Rgraphviz'
Creating a generic function for 'lines' from package 'graphics' in package 'Rgraphviz'
** help
*** installing help indices
** building package indices
** installing vignettes
   'Rgraphviz.Rnw' 
   'newRgraphvizInterface.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'Rgraphviz' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c LL_funcs.c -o LL_funcs.o
In file included from common.h:7:0,
                 from LL_funcs.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:430:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c Rgraphviz.c -o Rgraphviz.o
In file included from common.h:7:0,
                 from Rgraphviz.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c RgraphvizInit.c -o RgraphvizInit.o
In file included from common.h:7:0,
                 from RgraphvizInit.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c agopen.c -o agopen.o
In file included from common.h:7:0,
                 from agopen.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c agread.c -o agread.o
In file included from common.h:7:0,
                 from agread.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c agwrite.c -o agwrite.o
In file included from common.h:7:0,
                 from agwrite.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c bezier.c -o bezier.o
In file included from common.h:7:0,
                 from bezier.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c buildEdgeList.c -o buildEdgeList.o
In file included from common.h:7:0,
                 from buildEdgeList.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c buildNodeList.c -o buildNodeList.o
In file included from common.h:7:0,
                 from buildNodeList.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c doLayout.c -o doLayout.o
In file included from common.h:7:0,
                 from doLayout.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c graphvizVersion.c -o graphvizVersion.o
In file included from common.h:7:0,
                 from graphvizVersion.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -Ilibwin/x64/include/graphviz -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC   -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
In file included from common.h:7:0,
                 from init.c:1:
D:/biocbld/BBS-2˜1.11-/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -m64 -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -WI,--enable-auto-import libwin/x64/lib/libxdot.a libwin/x64/lib/libgvplugin_dot_layout.a libwin/x64/lib/libgvplugin_neato_layout.a libwin/x64/lib/libgvplugin_core.a libwin/x64/lib/libgvc.a libwin/x64/lib/libpathplan.a libwin/x64/lib/libgraph.a libwin/x64/lib/libcdt.a -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/x64 -lR
sed "s!@GRAPHVIZ_VERSION@!"2.28.0"!" ../R/graphviz_build_version.R.in |\
  sed "s!@GRAPHVIZ_BUNDLED@!TRUE!" > ../R/graphviz_build_version.R
installing to D:/biocbld/bbs-2.11-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rgraphviz' as Rgraphviz_2.2.1.zip

* DONE (Rgraphviz)